Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq80 163 2e-34 seq1347 89.7 3e-12 >seq80 Length=143247 Score = 163 bits (180), Expect = 2e-34 Identities = 368/547 (67%), Gaps = 7/547 (1%) Strand=Plus/Minus Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394 |||||||| | || || || || ||| |||| ||| ||| | || | | || ||| Sbjct 56287 GGTATTGACCTTGGCACCACCTATTCTTGCGTAGGTGTGTGGAAGAACGATGCTGTGGAA 56228 Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454 || || || || ||||| || || || || || || || || || | || || || || Sbjct 56227 ATCATCGCGAACGACCAGGGAAACAGGACGACCCCGTCCTACGTCGCGTTCACCGACACG 56168 Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATT 474514 || ||| | || |||||||| || | |||| ||| || || | || || ||| Sbjct 56167 GAGAGACTTGTCGGTGATGCTGCGAAGAACCAAGTCGCACGCAACCCGGAAAACACCATT 56108 Query 474515 TTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATG 474574 || ||||| || | | || ||||| || ||||||||| || | ||||| || || ||| Sbjct 56107 TTCGATGCCAAGCGCCTAATCGGTCGCAAGTTTGATGATCCCTCGGTCCAGTCGGACATG 56048 Query 474575 CGTCATTGGCCTTTTAAGGTGATAAATGTT---GGTGGTAAACCATATATAGAAGCAATA 474631 |||||||| || ||||| || || | || | || || || |||| | Sbjct 56047 AAGCATTGGCCATTCAAGGTCATTGCTGGTCCGGGAGACAAGCCCCTCATTGAAGTCACG 55988 Query 474632 CACGCAGGTGAAACTA-AACAATTTTCACCG-GAACAAATTTCTTCAATGGTTTTAGCCA 474689 || |||| || | | || | || |||| ||| | |||| | |||||||| | || Sbjct 55987 TAC-CAGG-GAGAGAAGAAGACGTTCCACCCTGAAGAGGTTTCCGCCATGGTTTTGGGCA 55930 Query 474690 AAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTG 474749 ||||||| ||| |||| | || || || | ||||| | || || || ||||| | Sbjct 55929 AAATGAAGGAAATCGCGGAGGCTTACCTCGGCAAGGAAGTGAAGGAGGCCGTCATTACCG 55870 Query 474750 TTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAG 474809 |||| || || || || ||||| || ||||| || || || ||||| || | ||||| | Sbjct 55869 TTCCTGCGTACTTCAACGATTCGCAGCGTCAGGCTACCAAGGATGCTGGTACCATTGCCG 55810 Query 474810 GTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTG 474869 | || | || | || ||||| || || || ||||| || || ||||||||||||| | Sbjct 55809 GCCTCAGCGTCCTCCGCATTATCAACGAGCCCACAGCGGCTGCCATTGCTTATGGTCTGG 55750 Query 474870 ATAAGAA 474876 | ||||| Sbjct 55749 ACAAGAA 55743 >seq1347 Length=520 Score = 89.7 bits (98), Expect = 3e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665 ||||||| | || || | ||||| ||||||||||| ||||| || |||||||| ||| Sbjct 168 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 109 Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTT 480725 || ||||||||||| || |||||| || || || || ||||| | | | Sbjct 108 ATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACA 49 Query 480726 TCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || || ||||| |||||||| || || || || Sbjct 48 TCAAGCGTGATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTG 5 Score = 89.7 bits (98), Expect = 3e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665 ||||||| | || || | ||||| ||||||||||| ||||| || |||||||| ||| Sbjct 396 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 337 Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTT 480725 || ||||||||||| || |||||| || || || || ||||| | | | Sbjct 336 ATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACA 277 Query 480726 TCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || || ||||| |||||||| || || || || Sbjct 276 TCAAGCGTGATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTG 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267933970131116