Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1348 98.7 2e-15 seq1347 87.8 3e-12 seq1346 87.8 3e-12 >seq1348 Length=13918 Score = 98.7 bits (108), Expect = 2e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || || || || || | ||| | ||| || ||| || || || || Sbjct 302 ACCACCACGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGA 243 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | || ||| |||| ||||| || || ||||||||||| | | ||| || ||||| || Sbjct 242 CAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGG 183 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| || || || || || || || || || |||||||||| || || Sbjct 182 AATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAAC 123 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || ||||| || ||||| | || || | || ||||||||| Sbjct 122 ATCAAGCGTGATGGTCTTCCCAGTAAGAGTCTTCACAAAGATCTGCATT 74 >seq1347 Length=520 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || || | ||| || || || || || | ||| | ||| || ||| || || || Sbjct 231 ATTCCTCCGCGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCG 172 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| |||| ||||| || || ||||||||||| | | ||| || ||||| Sbjct 171 GACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGG 112 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || || || || || || || |||||||||| || Sbjct 111 GGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCA 52 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || || ||||| || || || | || || | || ||||||||| Sbjct 51 ACATCAAGCGTGATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCATT 1 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || || | ||| || || || || || | ||| | ||| || ||| || || || Sbjct 459 ATTCCTCCGCGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCG 400 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| |||| ||||| || || ||||||||||| | | ||| || ||||| Sbjct 399 GACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGG 340 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || || || || || || || |||||||||| || Sbjct 339 GGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCA 280 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || || ||||| || || || | || || | || ||||||||| Sbjct 279 ACATCAAGCGTGATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCATT 229 >seq1346 Length=13467 Score = 87.8 bits (96), Expect = 3e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || || | ||| || || || || || | ||| | ||| || ||| || || || Sbjct 13327 ATTCCTCCGCGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCG 13268 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| |||| ||||| || || ||||||||||| | | ||| || ||||| Sbjct 13267 GACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGG 13208 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || || || || || || || || ||||||| || Sbjct 13207 GGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTGTCTGACGGCTCA 13148 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || || || ||||| || || || | || || | || ||||||||||| Sbjct 13147 ACATCAAGCGTGATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCATTTT 13095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905071316718600