Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1968 89.7 2e-12 seq374 84.2 6e-11 >seq1968 Length=55785 Score = 89.7 bits (98), Expect = 2e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 408951 TAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGAGTCCCAC 409009 || ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 53299 TAGCTCAGTTGGTTAGAGCGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGATCCCCAC 53241 >seq374 Length=88443 Score = 84.2 bits (92), Expect = 6e-11 Identities = 159/228 (70%), Gaps = 11/228 (5%) Strand=Plus/Plus Query 302622 TTTTACA-GCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTT 302680 |||| || |||||||| || | ||| | |||||||||||||| |||||||| || || | Sbjct 5759 TTTTGCACGCTGTATCGATGATACCTTCGCGACCACCCATAGCGTGGAAGAAGAGTTCAT 5818 Query 302681 CCGGTCGTAGCCCCCCAATAAAGG-AGCTCT---CAACGAAACCACGCGCCTCGGGCGAA 302736 || ||| || | | ||| |||| | | ||||| || || | ||| || Sbjct 5819 GAGGCTCTAGTCC----AGAGAGGTAGCTGTTTTCGACGAAGCCGCGACTTTGGGGGGAG 5874 Query 302737 TCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC-TCATAGCCGTATGGGATACGCTT 302795 | ||||| ||| ||||||||||| | | |||| | ||||| | || || ||||| Sbjct 5875 TAATCGAATTTGTGGAAGTGTGGCAGAGAAC-GTTCATTGAAGCCGAAGGGAATTCGCTT 5933 Query 302796 TCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || || ||||||||||| || | || | || ||||||||||| || Sbjct 5934 CCCCTCCACGTTCTGCTGGCCGACACAAGCCATGATCTGCGAAATGTT 5981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471709790740629