Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq374 98.7 1e-14 seq2236 96.9 4e-14 >seq374 Length=88443 Score = 98.7 bits (108), Expect = 1e-14 Identities = 191/278 (69%), Gaps = 12/278 (4%) Strand=Plus/Minus Query 507599 GTCGAGCGCCACCTGCGCGCGGGCGACGCCGTGGTGATGAACCGGCAGCCGTCGCTGCAC 507658 |||||||||||| |||| | || ||| ||| || | || || ||||||||||| ||| Sbjct 8147 GTCGAGCGCCACATGCGGGATGGAGACTTTGTGCTGTTCAATCGACAGCCGTCGCTTCAC 8088 Query 507659 ATGGGCTCCATGCTCATG---CACAAGGTGGTGCCCATGC--CCGGGCGC-ACCATGCGA 507712 | || || |||| ||| ||||| | || | ||| | | ||| | || Sbjct 8087 AAAATGTCGAT---CATGGGCCACCAGGTGAAG---ATTCTTCCGTACTCGACCTTTCGT 8034 Query 507713 TTCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAACCTG 507772 |||||||| | |||||| |||||||||||||||| || || || || |||||| || Sbjct 8033 CTCAACCTGTCTGTCACGTCTCCCTACAACGCCGACTTCGATGGAGATGAAATGAACTTG 7974 Query 507773 CACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGGTGACGCACACCATGAGCGTGTCGCTC 507832 ||| | | ||| ||| |||||||||| | | |||| |||| || || Sbjct 7973 CACTTAGCGCAGAGCGAAGAAACGCGCGCCGAAATCAAGCACTTGATGAAGGTTCCGAAA 7914 Query 507833 AAGACCGTGTCGCCGCAGGCCAACAAGCCCATCATCGG 507870 ||| ||| |||||||||| ||||||||| |||| || Sbjct 7913 CAGATCGTTTCGCCGCAGGGAAACAAGCCCGTCATGGG 7876 >seq2236 Length=21742 Score = 96.9 bits (106), Expect = 4e-14 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524 |||| || ||| | ||||||||||||||||| ||| |||||||| |||||||| |||| Sbjct 12794 TCCAGAGGGCGCAGAAGAGGTCGCGCGCCCGTCGCTCTTCCTTGCCATGGTTCTTCTTGA 12853 Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 1628584 |||||| | || | || || |||||| || |||| ||| ||| | | ||| | Sbjct 12854 TGTCGAGGAAATCAAAAACATCAAAGTGCCAAGGTTCCAAGTAAATGGCGAGGCTGCCTT 12913 Query 1628585 TGCGCTTGCCGCCGCC 1628600 |||| ||||||||||| Sbjct 12914 TGCGTTTGCCGCCGCC 12929 Score = 93.3 bits (102), Expect = 5e-13 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || |||||||||||||||||| | |||||| ||||| | |||||| |||| ||||| || Sbjct 12927 GCCCTGGTCGACGTAGCGCGCGGCGTCGTTGAAGACTCTGAGCATCGGCAGAAGGCCATT 12986 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCT-TGTGCGCGGCAA 1630180 || | ||| || || || | |||| | | ||| || | | ||| | |||| | Sbjct 12987 CGAGTAGCCATTCGTTCCTCGGATGTAGCTGTTTGTGGCTCGAATGTCTGT-CACGGCGA 13045 Query 1630181 AGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGC 1630240 |||| ||| || || | |||||| || | |||||| || || || ||| | | || | Sbjct 13046 GACCGAGGCCCCCAGCTGTCTTGGAAATCAACGCGCATTGCTTCAGTGTGCTGAAAATTC 13105 Query 1630241 CCTCGATCGAGTC 1630253 | ||||||||||| Sbjct 13106 CATCGATCGAGTC 13118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106670036207289