Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1346 140 3e-28 seq1347 134 1e-26 seq1348 122 8e-23 seq2236 102 7e-17 >seq1346 Length=13467 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || ||||| || || || | | Sbjct 13098 ATGCAGATCTTTGTGAAGACTCTTACCGGGAAGACCATCACGCTTGATGTTGAGCCGTCA 13157 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||| ||||| ||||| || || || ||||| Sbjct 13158 GACACCATCGAGAACGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAG 13217 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||| ||||| || || ||| ||||||| ||| |||| || || ||| Sbjct 13218 CAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCCGACTACAAC 13277 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| ||||| || |||||||| ||||| | |||||||| Sbjct 13278 ATTCAGAAGGAGTCGACTCTCCACTTGGTTTTGCGTCTTCGCGGAGG 13324 >seq1347 Length=520 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || ||||| || || || | | Sbjct 2 ATGCAGATCTTTGTGAAGACTCTTACCGGGAAGACCATCACGCTTGATGTTGAGCCGTCA 61 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||||||| ||||| ||||| || || || ||||| Sbjct 62 GATACCATCGAGAACGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAG 121 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||| ||||| || || ||| ||||||| ||| |||| || || ||| Sbjct 122 CAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCCGACTACAAC 181 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| ||||| || |||||||| ||||| | |||||||| Sbjct 182 ATTCAGAAGGAGTCGACTCTCCACTTGGTTTTGCGTCTTCGCGGAGG 228 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || ||||| || || || | | Sbjct 230 ATGCAGATCTTTGTGAAGACTCTTACCGGGAAGACCATCACGCTTGATGTTGAGCCGTCA 289 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||||||| ||||| ||||| || || || ||||| Sbjct 290 GATACCATCGAGAACGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAG 349 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||| ||||| || || ||| ||||||| ||| |||| || || ||| Sbjct 350 CAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCCGACTACAAC 409 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| ||||| || |||||||| ||||| | |||||||| Sbjct 410 ATTCAGAAGGAGTCGACTCTCCACTTGGTTTTGCGTCTTCGCGGAGG 456 >seq1348 Length=13918 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || ||||| || || || | | Sbjct 75 ATGCAGATCTTTGTGAAGACTCTTACTGGGAAGACCATCACGCTTGATGTTGAGCCGTCA 134 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||||||| ||||| ||||| || || || ||||| Sbjct 135 GATACCATCGAGAACGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAG 194 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||| ||||| || || ||| ||||||| ||| |||| || || ||| Sbjct 195 CAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCCGACTACAAC 254 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| ||||| ||||| || |||||||| ||||| Sbjct 255 ATTCAGAAGGAGTCGACTCTCCACTTGGTTTTGCG 289 >seq2236 Length=21742 Score = 102 bits (112), Expect = 7e-17 Identities = 269/397 (68%), Gaps = 19/397 (5%) Strand=Plus/Plus Query 138841 CGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGC 138900 || || |||| ||| ||| |||| ||| || | | |||| ||||| || || ||||| Sbjct 11825 CGAGCTTCGGGGCTGTCGAACGGATAGCGAAGAAGCATGAAGGCGTCTGCGAGACCTTGG 11884 Query 138901 ACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTC---GATAGGA 138957 || |||| |||||||| || || |||| | ||| | ||| | || |||| || || Sbjct 11885 ACTCCCAAACCGACAGGTCGGTGCCGCA-AGTTG-CTCTTCTTCG-CTTCTGGGACTGGG 11941 Query 138958 TAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTAT-GCTT 139016 || |||||| |||||| | ||| || |||| | | || || | || | |||| Sbjct 11942 TAGTAGTTTCGATCGATCACGCGGTTCAAGTTTCTCGTCATGACTTT-GACGATTCGCTT 12000 Query 139017 TAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGAC 139076 || |||| | ||| | || | | || ||| || ||| || || ||| | Sbjct 12001 CAAGTGTTCGTAGTCGAAAGTTCGGC-----TC-TCG-CG--GTCCACGAACTTGGGCAG 12051 Query 139077 ACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGG-TCGCTGTATTCGACAATTT 139135 | | ||||| | |||||| || ||||| ||||| | ||| | |||||||| | || Sbjct 12052 CGAGACGGAGGCCAAGTTGCAGACAGCCACCTCGTCTTTGCTCG-TATATTCGACGACTT 12110 Query 139136 CGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTAC 139195 | | ||||| || || ||||||||||| || || || | || ||||| || || || | Sbjct 12111 CTGTGCACAAGTTGCTGCACTTGATCGTTCCCAAGTTCTTCTGGTTGCTCTTCCGATTGC 12170 Query 139196 AAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTC 139232 | || |||||||| ||||| ||||| || || || || Sbjct 12171 ATGCGTCTTTGTACAGCATGTACGGCGTCCCCGTCTC 12207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449865449192760