Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1703 132 8e-25 seq2528 107 3e-17 seq2856 95.1 2e-13 seq2236 93.3 7e-13 seq374 89.7 8e-12 >seq1703 Length=160338 Score = 132 bits (146), Expect = 8e-25 Identities = 175/240 (73%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| |||| |||||||| | | Sbjct 109983 TGTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCAAGTTCGCCAGGGA 109924 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || ||||| ||||||||||| |||| | | || | |||||| || Sbjct 109923 GGACAAGACGGACGGCAGTCTGGATCTCTCGGGAGGACAGAGTATCCTTCTTGTT-GTAT 109865 Query 1485590 GCGC-CAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || || ||||||||| ||| | || ||||| | ||| || || || || Sbjct 109864 TTGCAGAGCTTGCCGGCCTCAGTGGCAATTTTGTCGAAGGTATCGGCGATGAAAGAAGTC 109805 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 |||||| |||||| || ||| ||| || ||||||||||||||||| | ||||||| Sbjct 109804 ATGATCATCATCGACTTCTTGCTGATCCCAGTCTCGGGGTGCACCTGCTTCAACACCTTG 109745 >seq2528 Length=101430 Score = 107 bits (118), Expect = 3e-17 Identities = 171/243 (70%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 1485467 CGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGC 1485526 || |||||||||||||||||||||| ||||| || ||||||||| | || ||||| ||| Sbjct 20917 CGGTGTACTTGGTGACGGCCTTGGTGCCCTCAGACACGGCGTGCTTTGCGAGTTCTCCGG 20976 Query 1485527 GCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAG 1485586 | | | ||| || |||||||||||||| || |||| | | |||| ||||| | Sbjct 20977 GGAGAACCAGACGAACGGCGGTCTGGATTTCCCGGGAGGACAGAGTGTCCTTTTTGTT-G 21035 Query 1485587 TGCGCGC-CAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAG 1485645 | | || || ||| ||||| | | |||| ||||| | || | || || Sbjct 21036 TACTTGCAGAGCTTGCCAGCCTCCGAGGCGATCTTGTCGAAGGTATCAGCAATGAAGGAA 21095 Query 1485646 TTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACC 1485705 |||||||| ||| || || ||| |||||| || |||||||||||||| | ||| Sbjct 21096 GTCATGATCATCATGGACTTCTTGCTGATGCCAGTCTCAGGGTGCACCTGCTTCAAAACC 21155 Query 1485706 TTG 1485708 ||| Sbjct 21156 TTG 21158 >seq2856 Length=43924 Score = 95.1 bits (104), Expect = 2e-13 Identities = 119/161 (74%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| |||||||| |||||||| ||||| |||||| || || ||||| || | || Sbjct 21348 TGACCCCCGCCTTTTGGTACTCGCCAACGCGTTTCTCGAAGAAATTCGTCTTTCCTTGGA 21407 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCAC-CCG 794009 | || |||||||||||||| |||||| || | || | | || |||| | || || Sbjct 21408 GAGAAATCAACTCCATCCAGTCGAACGGATTCGTCGCGAAGAAGATCTTC-GGAACTCCC 21466 Query 794010 AGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTG 794050 || || | ||||| || || ||||| |||||||||||||| Sbjct 21467 AGAGAAGTCAGCAGACGATCCGCGACAAATTCAATGTACTG 21507 >seq2236 Length=21742 Score = 93.3 bits (102), Expect = 7e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 2071578 GACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGT 2071637 |||||| || ||||||| |||| || | | || |||| ||||| ||||||||| | Sbjct 12103 GACGACTTCTGTGCACAAGTTGCTGCACTTGATCGTTCCCAAGTTCTTCTGGTTGCTCTT 12162 Query 2071638 CAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGAC 2071697 | | ||| ||||| |||| ||||||||| |||| |||||||||||||||||| || Sbjct 12163 CCGATTGCATGCGTCTTTGTACAGCATGTACGGCGTCCCCGTCTCGATCTGCGCCTGGAG 12222 Query 2071698 GATGGCCGACCAAA 2071711 || || |||||| Sbjct 12223 AATCGCAAACCAAA 12236 Score = 91.5 bits (100), Expect = 2e-12 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || ||||||||| |||||||| | |||||| ||||| | |||||| |||| |||||| || Sbjct 12927 GCCCTGGTCGACGTAGCGCGCGGCGTCGTTGAAGACTCTGAGCATCGGCAGAAGGCCATT 12986 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCT-TGTGCGCGGCAA 2073655 || | ||| || || || | |||| | | ||| || | | ||| | |||| | Sbjct 12987 CGAGTAGCCATTCGTTCCTCGGATGTAGCTGTTTGTGGCTCGAATGTCTGT-CACGGCGA 13045 Query 2073656 AGCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGC 2073715 |||| ||| || || | |||||| || | |||||| | ||||| || | | || | Sbjct 13046 GACCGAGGCCCCCAGCTGTCTTGGAAATCAACGCGCATTGCTTCAGTGTGCTGAAAATTC 13105 Query 2073716 CCTCGATCGAGTCGGCCTTCATGTCCAACAGAAA 2073749 | ||||||||||| | | ||| || |||||| Sbjct 13106 CATCGATCGAGTCCTCTTGCATCGTCAGCAGAAA 13139 >seq374 Length=88443 Score = 89.7 bits (98), Expect = 8e-12 Identities = 193/283 (68%), Gaps = 8/283 (3%) Strand=Plus/Minus Query 429528 GTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGAACCGGCAGCCGTCGCTCCAC 429587 |||||||||||| |||| || ||| ||| | | || || ||||||||||| ||| Sbjct 8147 GTCGAGCGCCACATGCGGGATGGAGACTTTGTGCTGTTCAATCGACAGCCGTCGCTTCAC 8088 Query 429588 ATGGGGTCGATGCTCAACCACAAGGTGGTGCCCATGC--CCGGTCGC-ACCTTCCGGCTC 429644 | |||||| | |||| ||||| | || | ||| | | ||||| || ||| Sbjct 8087 AAAATGTCGATCATGGGCCACCAGGTGAAG---ATTCTTCCGTACTCGACCTTTCGTCTC 8031 Query 429645 AACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGCAC 429704 |||||| | || ||| |||||||||||||||| || || || || |||||| ||||| Sbjct 8030 AACCTGTCTGTCACGTCTCCCTACAACGCCGACTTCGATGGAGATGAAATGAACTTGCAC 7971 Query 429705 GTGCCCCAG-TCGGAGATGGCACGCGCCGAAGTCGCCCACACCATGGGCGTGGCCCTCAA 429763 | | ||| || ||| | ||||||||| || ||| ||| || | | Sbjct 7970 TTAGCGCAGAGCGAAGA-AACGCGCGCCGAAATCAAGCACTTGATGAAGGTTCCGAAACA 7912 Query 429764 GGCCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGGCTCGTG 429806 | ||| |||||||||| ||||||||| |||| ||| | ||| Sbjct 7911 GATCGTTTCGCCGCAGGGAAACAAGCCCGTCATGGGGATTGTG 7869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915638256634763