Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq80 122 7e-22 >seq80 Length=143247 Score = 122 bits (134), Expect = 7e-22 Identities = 448/699 (64%), Gaps = 7/699 (1%) Strand=Plus/Plus Query 282187 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 282246 ||| || || ||||||||||| || | | || | || | || || | |||| || Sbjct 55598 ACGGTTGTCGAAATCTTCACCACCAAGATGGGTGTCACCAGCGGTGGCCTTGACTTCAAA 55657 Query 282247 AAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAAT 282306 | || ||||| | | | || | ||||| || || |||||||| || || || Sbjct 55658 GATACCGTCTTCGATTGTAAGCAGCGACACATCGAACGTACCGCCACCCATGTCGAAGAT 55717 Query 282307 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 282366 || || ||||| || | || || || |||||||| |||| ||||| || || Sbjct 55718 GAGGACGTTCATCTCACCGCAGCCCTTCTTGTCCAGACCATAAGCAATGGCAGCCGCTGT 55777 Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 || || || ||||| | | || | || || ||||| | || ||||| || || || Sbjct 55778 GGGCTCGTTGATAATGCGGAGGACGCTGAGGCCGGCAATGGTACCAGCATCCTTGGTAGC 55837 Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTT 282486 || | || |||||||| || || |||||||| ||||| ||||| || | ||||| || Sbjct 55838 CTGACGCTGCGAATCGTTGAAGTACGCAGGAACGGTAATGACGGCCTCCTTCACTTCCTT 55897 Query 282487 TCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTC 282546 || | ||||| || ||| |||||||| | |||| ||| | |||| | ||| Sbjct 55898 GCCGAGGTAAGCCTCCGCGATTTCCTTCATTTTGCCCAAAACCATGGCGGAAACCTCTTC 55957 Query 282547 TGG--AGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACC- 282603 || ||| | ||| || || || | ||||||| || || | || Sbjct 55958 AGGGTGGAACGT--CTTCTTCTCTCCCTGGTACGTGACTTCAATGAGGGGCTTGTCTCCC 56015 Query 282604 --AACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTA 282661 | || ||| || || |||||||||| ||||| || || || || | |||| | Sbjct 56016 GGACCAGCAATGACCTTGAATGGCCAATGCTTCATGTCCGACTGGACCGAGGGATCATCA 56075 Query 282662 AAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCT 282721 || | | ||| |||| || || ||||| ||||| || || || || ||| || Sbjct 56076 AACTTGCGACCGATTAGGCGCTTGGCATCGAAAATGGTGTTTTCCGGGTTGCGTGCGACT 56135 Query 282722 TGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGA 282781 || | || || ||||| || | || || || || || || | || || || || Sbjct 56136 TGGTTCTTCGCAGCATCACCGACAAGTCTCTCCGTGTCGGTGAACGCGACGTAGGACGGG 56195 Query 282782 GTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCT 282841 || || | || || || || ||||| || ||||| || | | || | ||| |||||| Sbjct 56196 GTCGTCCTGTTTCCCTGGTCGTTCGCGATGATTTCCACAGCATCGTTCTTCCACACACCT 56255 Query 282842 ACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 282880 || ||| | | || || || | |||||||| | |||| Sbjct 56256 ACGCAAGAATAGGTGGTGCCAAGGTCAATACCCACAGCA 56294 Score = 93.3 bits (102), Expect = 3e-13 Identities = 186/273 (68%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 ||||| || || || | ||| || |||||||| ||||| ||||| || | | || || Sbjct 54849 ATACCGTTAGCGTCGATATCGAAAGTGACTTCGATTTGGGGGACACCACGGGGGGCGGGG 54908 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| || |||| | ||| | ||||| || || ||||| || | || ||| Sbjct 54909 GGGATACCATCCAGGTGGAATTTGCCCAGGAGGTTGTTGTCTTTGGTCATCGCACGCTCA 54968 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 || ||| | | || || ||| | | || || || | || || || || |||| Sbjct 54969 CCTTCGTACACCTGAATCAGCACTCCTGGCTGGTTGTCCGCGTACGTGGTGAAGG-TCTG 55027 Query 281621 -GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGC 281679 || || || || || ||||||||||| ||||| | |||||||| | ||||||||| Sbjct 55028 AGACTTCTTGGTCGGGATCGTTGTGTTTCTTTCAATCAGCTTGGTCATGACACCACCAGC 55087 Query 281680 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATC 281712 ||| || | ||| ||||| ||||| | ||||| Sbjct 55088 TGTCTCCAGACCGAGAGAGAGAGGCGCAACATC 55120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740349719460042