Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2236 127 2e-24 seq1348 91.5 1e-13 seq1347 86.0 6e-12 seq1346 82.4 7e-11 >seq2236 Length=21742 Score = 127 bits (140), Expect = 2e-24 Identities = 402/609 (66%), Gaps = 22/609 (4%) Strand=Plus/Plus Query 147171 TTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGAC 147230 ||| ||||| |||||||| || || |||| || ||| ||| | | |||| | ||| Sbjct 11764 TTCGCAGCTGGCCTCGAGAGCGGCAAAGTAGATACACTCGAAGATGTTTCTGTTCAAGAC 11823 Query 147231 GGTCGCTTCTTCGCTCTCGTAAGGCATA-CGCAGAAGCACAAAGGCATCGGCCAAACCCT 147289 | ||||| ||| ||| | || ||| || ||||||| ||||| || || | ||| | Sbjct 11824 GCGAGCTTCGGGGCTGTCGAACGG-ATAGCGAAGAAGCATGAAGGCGTCTGCGAGACCTT 11882 Query 147290 GGATACCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCG-CTCGCTATGGGA 147348 ||| || | |||| |||||| ||| |||||| |||||| || | |||| Sbjct 11883 GGACTCCCAAACCGACAGGTCGGTGCCGCAAGTTGCTCTTCTTCGCTTCTGGGACTGGG- 11941 Query 147349 TAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATT-GTTTT 147407 |||| ||| ||||| || | ||| | ||| | | | ||||| ||| | || Sbjct 11942 TAGTAGTTTCGATCGATCACGCGGTTCAAGTTTCTCGTCATGACTTTGACGATTCGCTTC 12001 Query 147408 GAGTTTCTCGAAATCATAAGTCCCGTCTTCGA----CACGTACGCATTGGTTCACGGCGA 147463 ||| | ||| | || |||| | | ||| |||| || |||| || | || Sbjct 12002 AAGTGT-TCGTAGTCGAAAGTTCGGCTCTCGCGGTCCACGAAC---TTGGG-CAGCGAGA 12056 Query 147464 TAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCG-TCGCTGTACTGCACGATTTCGGCG 147522 || |||| |||||||| ||| ||| || | ||| | || | |||| ||| | | Sbjct 12057 CGGAGGCCAAGTTGCAGACAGCCACCTCGTCTTTGCTCG-TATATTCGACGACTTCTGTG 12115 Query 147523 CACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCG 147582 |||| ||||||||| || || |||||| || | ||| ||||| ||||||||||| ||| Sbjct 12116 CACAAGTTGCTGCACTTGATCGTTCCCAAGTTCTTCTGGTTGCTCTTCCGATTGCATGCG 12175 Query 147583 TCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTA 147639 |||||| | ||||||||||| || ||||||| |||| | | || ||||| | Sbjct 12176 TCTTTGTACAGCATGTACGGCGTCCCCGTCTCGATCTGCGCCTGGAGAATCGCAAACCAA 12235 Query 147640 TGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTAC 147699 || | ||| ||| | | | || ||| || || ||| |||||| ||||||||| Sbjct 12236 ---AGATGCTGAGCTGGAATCGTCTTCCGGCCTCGACCTTCGCGTTCGTAGCGCTCGTAC 12292 Query 147700 AACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATC 147759 ||| | || |||||||| | || | | ||||| || | | || |||||| Sbjct 12293 AACTCTTTGAATTCGTCGCCCCACACCTCCGTCAAACCGGGGCATTCGTTAGGGCACATC 12352 Query 147760 AGCGACCAC 147768 |||| |||| Sbjct 12353 AGCGTCCAC 12361 >seq1348 Length=13918 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||||||||| || | | ||||| || ||||||||||||||| || || || Sbjct 289 CGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGGCCG 230 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || | ||| || || | | | || |||||||| ||||| || || || ||||| || Sbjct 229 TCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTG 170 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || ||| |||| | || | ||||| | |||||| || || | ||| | Sbjct 169 TCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACATCAAGCGTGATG 110 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| ||||| || | || |||||||| Sbjct 109 GTCTTCCCAGTAAGAGTCTTCACAAAGATCTGCAT 75 >seq1347 Length=520 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||||||||| || | | ||||| || ||||||||||||||| || || || Sbjct 216 CGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGGCCG 157 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || | ||| || || | | | || |||||||| ||||| || || || ||||| || Sbjct 156 TCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTG 97 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || ||| |||| | || | ||||| | |||||| || || | ||| | Sbjct 96 TCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACATCAAGCGTGATG 37 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || ||||| || | || |||||||| Sbjct 36 GTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCAT 2 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||||||||| || | | ||||| || ||||||||||||||| || || || Sbjct 444 CGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGGCCG 385 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || | ||| || || | | | || |||||||| ||||| || || || ||||| || Sbjct 384 TCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTG 325 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || ||| |||| | || | ||||| | |||||| || || | ||| | Sbjct 324 TCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACATCAAGCGTGATG 265 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || ||||| || | || |||||||| Sbjct 264 GTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCAT 230 >seq1346 Length=13467 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||||||||| || | | ||||| || ||||||||||||||| || || || Sbjct 13312 CGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGGCCG 13253 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || | ||| || || | | | || |||||||| ||||| || || || ||||| || Sbjct 13252 TCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTG 13193 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || ||| |||| | || | || || | |||||| || || | ||| | Sbjct 13192 TCCTGGATCTTTGCCTTCACGTTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATG 13133 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || ||||| || | || |||||||| Sbjct 13132 GTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCAT 13098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476577140172120