Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1348 125 6e-24 seq1346 123 2e-23 seq1347 120 3e-22 seq687 100 3e-16 seq940 93.3 4e-14 >seq1348 Length=13918 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| ||||| || | || |||||| ||||||||||| |||| | Sbjct 301 CCACCACGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAC 242 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||||| |||| |||| |||||| || ||||| |||| |||||||| || | ||| Sbjct 241 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 182 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||||||| ||||||| ||||| | | | || || || || || Sbjct 181 ATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACA 122 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || | |||||| || || || || | ||| |||||||| |||||||||| Sbjct 121 TCAAGCGTGATGGTCTTCCCAGTAAGAGTCTTCACAAAGATCTGCATTC 73 >seq1346 Length=13467 Score = 123 bits (136), Expect = 2e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| || || | | ||| ||||| || | || |||||| ||||||||||| |||| Sbjct 13326 TTCCTCCGCGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGG 13267 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 || ||||| |||| |||| |||||| || ||||| |||| |||||||| || | | Sbjct 13266 ACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGG 13207 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | ||||||||| ||||||| ||||| | | | ||||| || || | Sbjct 13206 GAATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTGTCTGACGGCTCAA 13147 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 | || | |||||| || || || || | ||| |||||||| ||||||||| || Sbjct 13146 CATCAAGCGTGATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCATTTTG 13094 >seq1347 Length=520 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| || || | | ||| ||||| || | || |||||| ||||||||||| |||| Sbjct 458 TTCCTCCGCGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGG 399 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 || ||||| |||| |||| |||||| || ||||| |||| |||||||| || | | Sbjct 398 ACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGG 339 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | ||||||||| ||||||| ||||| | | | || || || || | Sbjct 338 GAATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAA 279 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | || | |||||| || || || || | ||| |||||||| |||||||||| Sbjct 278 CATCAAGCGTGATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCATTC 228 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| || || | | ||| ||||| || | || |||||| ||||||||||| |||| Sbjct 230 TTCCTCCGCGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGG 171 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 || ||||| |||| |||| |||||| || ||||| |||| |||||||| || | | Sbjct 170 ACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGG 111 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | ||||||||| ||||||| ||||| | | | || || || || | Sbjct 110 GAATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAA 51 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 | || | |||||| || || || || | ||| |||||||| ||||||||| Sbjct 50 CATCAAGCGTGATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCATT 1 >seq687 Length=105670 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| | ||||| |||| || |||||||| || || || Sbjct 92654 TCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTCGAGCTGCTTGCCTGCGAAA 92595 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| ||||||||||| | |||| | |||||| ||| ||||| ||| | | || Sbjct 92594 ATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTGAATCTTGGCCTTGACATTT 92535 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||| | || || |||| |||||||| || || || | || ||||| Sbjct 92534 TCGATGGTGTCGGAAGGCTCGACGTCCAAAGTGATCGTCTTGCCGGTGAGCGTCTTCACG 92475 Query 35726 AATATCTGCATTCTG 35740 || ||||||||| || Sbjct 92474 AAAATCTGCATTTTG 92460 >seq940 Length=92775 Score = 93.3 bits (102), Expect = 4e-14 Identities = 200/293 (68%), Gaps = 6/293 (2%) Strand=Plus/Plus Query 44131 TGTGGAACGCTGCCCAAACACAACTGTTGCGAGAAGGTAAAATGCACCAATACATGCGTA 44190 ||||||| ||||| ||| |||||| | || || || |||||||| ||| || | | Sbjct 76098 TGTGGAATGCTGCGCAACTACAACTAGTACGGGACGGGAAAATGCATGGGTACCTGAGAA 76157 Query 44191 TGTATTGGTGCAAGAAGATATTGGAGTGGTCGGAAGATGCGCAAACCGCGCTCGTTCATG 44250 |||| ||| ||| ||||| |||| ||| | | ||||| ||| | || Sbjct 76158 TGTACTGGGCCAAAAAGATCCTGGAATGGACAAAGTCACCGCAAGAAGCGTTGAAGATTG 76217 Query 44251 CCATCTATCTGAACGACAAGTACAGTTTGGACGGTCGCGACCCCAACGG-GT-ACGTAGG 44308 ||||| | |||| ||||||||| ||||| || ||||||||||| || ||| || Sbjct 76218 CCATCGCTTTGAATGACAAGTACCACTTGGATGGCACTGACCCCAACGGCGTGACG--GG 76275 Query 44309 ATGTATGTGGTCCATTTGCGGTGTCCACGA-CAGGGCGTGGCGAGAGCTACCCATCTACG 44367 || |||||| ||||||||||||||||| ||||| | | |||| || | | || Sbjct 76276 CTGCATGTGGAGTATTTGCGGTGTCCACGATCAGGGTTTCAAG-GAGCGGCCTGTGTTCG 76334 Query 44368 GCAAAGTGCGCTACATGAACTACAACGGTTGCGTCAGAAAGTTTGATGTAAAA 44420 ||||| | | |||||||| || || |||| | || || ||||| ||| Sbjct 76335 GCAAAATCAGATACATGAATTATCCGGGCTGCGAGCGCAAATTCGATGTCAAA 76387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450761385162360