Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2236 138 1e-27 >seq2236 Length=21742 Score = 138 bits (152), Expect = 1e-27 Identities = 259/373 (69%), Gaps = 6/373 (2%) Strand=Plus/Plus Query 111053 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCA 111112 || ||||||||||| || |||||||| | ||||| ||| |||| || ||| ||| Sbjct 11870 TCTGCGAGACCTTGGACTCCCAAACCGACAGGTCGGTGCCGCAAGTTGCTCTTCTTCGCT 11929 Query 111113 GTCTCA-ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTT 111171 ||| || || || | |||| || || || ||||| | ||| | || | | ||| Sbjct 11930 -TCTGGGACTGGGTAGTAGTTTCGATCGATCACGCGGTTCAAGTTTCTCGTCATGA-CTT 11987 Query 111172 TGT-GATTT-CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTT 111229 || |||| | | |||| || | || || ||||| || |||| | || |||| Sbjct 11988 TGACGATTCGCTTCAAGTGTT-CGTAGTCGAAAGTTCGGCTCTCGCGGTCCACGAACTTG 12046 Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || || | || || ||||| ||||| |||||| ||| || || || || || | Sbjct 12047 GGCAGCGAGACGGAGGCCAAGTTGCAGACAGCCACCTCGTCTTTGCTCGTATATTCGACG 12106 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 | |||||| || |||||| | ||| ||||| ||||| ||||| ||||| |||||| Sbjct 12107 ACTTCTGTGCACAAGTTGCTGCACTTGATCGTTCCCAAGTTCTTCTGGTTGCTCTTCCGA 12166 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||||| || || ||||| |||||||| |||||||||||||| |||| | | |||||| Sbjct 12167 TTGCATGCGTCTTTGTACAGCATGTACGGCGTCCCCGTCTCGATCTGCGCCTGGAGAATC 12226 Query 111410 GCCTTCCAAACAT 111422 || ||||| || Sbjct 12227 GCAAACCAAAGAT 12239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627987119263200