Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq80 233 6e-56 seq1348 143 8e-29 seq1347 143 8e-29 seq1346 140 1e-27 seq687 116 1e-20 seq251 91.5 4e-13 >seq80 Length=143247 Score = 233 bits (258), Expect = 6e-56 Identities = 931/1454 (64%), Gaps = 21/1454 (1%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||| | || || || | || || || |||||||| || | ||| ||| | || ||| | Sbjct 56293 GCTGTGGGTATTGACCTTGGCACCACCTATTCTTGCGTAGGTGTGTGGAAGAACGATGCT 56234 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || ||||| || || || || || || ||||| || || || || ||||| || || ||| Sbjct 56233 GTGGAAATCATCGCGAACGACCAGGGAAACAGGACGACCCCGTCCTACGTCGCGTTCACC 56174 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || ||| | | | |||||| |||| || || |||| || || || |||| Sbjct 56173 GACACGGAGAGACTTGTCGGTGATGCTGCGAAGAACCAAGTCGCACGCAACCCGGAAAAC 56114 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || |||| ||||| ||||| || || ||| | | ||| ||| || || || Sbjct 56113 ACCATTTTCGATGCCAAGCGCCTAATCGGTCGCAAGTTTGATGATCCCTCGGTCCAGTCG 56054 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 || | || |||| || || | || || | || || || || | ||||| Sbjct 56053 GACATGAAGCATTGGCCATTCAAGGTCATTGCTGGTCCGGGAGACAAGCCCCTCATTGAA 55994 Query 349499 GTTGAATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCATCAATGGTTTT 349557 || || | || || || || | || |||| ||||| |||| | |||||||| Sbjct 55993 GTCACGTACCAGGGAGAG-AAGAAGACGTTCCACCCTGAAGAGGTTTCCGCCATGGTTTT 55935 Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617 | |||||||||||||| || || || || | || | ||| | || || || || Sbjct 55934 GGGCAAAATGAAGGAAATCGCGGAGGCTTACCTCGGCAAGGAAGTGAAGGAGGCCGTCAT 55875 Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677 ||| || || || || || || ||| | |||||| || || || |||||||| | ||| Sbjct 55874 TACCGTTCCTGCGTACTTCAACGATTCGCAGCGTCAGGCTACCAAGGATGCTGGTACCAT 55815 Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 ||| || | | || || | || || || || ||||| || || || ||||| ||||| Sbjct 55814 TGCCGGCCTCAGCGTCCTCCGCATTATCAACGAGCCCACAGCGGCTGCCATTGCTTATGG 55755 Query 349738 GCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 || || || | | | | || | || | || || || || | ||||| ||||| Sbjct 55754 TCTGGACAAGAAGGGCTGCGGTGAGATGAACGTCCTCATCTTCGACATGGGTGGCGGTAC 55695 Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857 || ||||| || || || ||| | ||||| || || |||||||| || || || ||||| Sbjct 55694 GTTCGATGTGTCGCTGCTTACAATCGAAGACGGTATCTTTGAAGTCAAGGCCACCGCTGG 55635 Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT--GTTAAA 349915 ||| || ||||||||||| |||||||| || || ||| | | | | || | || | Sbjct 55634 TGACACCCATCTTGGTGGTGAAGATTTCGACAACCGTTTGG--TGGACTTCTGCGTCCAG 55577 Query 349916 GAATTTAAGCGTCAAGCTAAAATTGATATTGGAGATAA--TCCTAGAGCAATG-----CG 349968 || || ||||| |||| || | ||| || | || | ||| || || Sbjct 55576 GACTTCAAGCG-CAAG---AACCGCGGAAAGGACATCAGCACCAACAGCCGTGCCCTTCG 55521 Query 349969 TCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTC 350028 |||||| | || ||| || || | ||| | | | || | || || | | Sbjct 55520 TCGCCTGCGTACCCAGTGCGAGCGCACCAAGAGAACTCTCTCTAGCAGCACTCAGGCAAC 55461 Query 350029 TATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCG 350088 || |||||||| |||||| ||| |||| || | || | ||||| | ||||| || Sbjct 55460 CATCGAAATTGACTCTCTTTTTGAGGGCATTGACTACTCTGTGTCTATCTCTCGTGCGCG 55401 Query 350089 GTTTGAAGAATTATGTATGGATCTTTTTAGAGCAA--CAATGGATCCTGTGGAAAAAGTA 350146 ||||| || | || ||||| || || |||| | || || || || || || Sbjct 55400 CTTTGAGGAGCTTTGCATGGA-CTACTT-CCGCAACTCCCTGTTGCCCGTCGAGAAGGTC 55343 Query 350147 TTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCT 350206 | || || | || ||| | | ||||| || || |||||||| ||| Sbjct 55342 CTCAAGGACTCTGGTATTGACAAGCGCTCGGTCAGCGAAGTTGTGTTGGTTGGTGGATCT 55283 Query 350207 ACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCT 350266 || ||||| || || |||| ||| | | |||| || || || || || || || | Sbjct 55282 ACCCGTATCCCCAAGATTCAGCAGCTCATCACTGACTTCTTCAACGGAAAGGAGCCGTGC 55223 Query 350267 AGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTA 350326 || || || || || ||||| || ||||| || ||||||||||| |||||| | || || Sbjct 55222 AGGTCGATCAACCCCGATGAGGCCGTTGCGTACGGTGCTGCTGTCCAGGCAGCGATCTTG 55163 Query 350327 TCTGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCG 350386 ||| || || ||| | | | ||| | | || || ||||| | || || || Sbjct 55162 AAGGGAGTTACCAGCTCTCAGGTGCAGGATTTGCTTCTTCTGGATGTTGCGCCTCTCTCT 55103 Query 350387 CTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTA 350446 || || | || || |||||| || ||||| || ||| ||||| | || | Sbjct 55102 CTCGGTCTGGAGACAGCTGGTGGTGTCATGACCAAGCTGATTGAAAGAAACACAACGATC 55043 Query 350447 CCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATT 350506 || || || ||||| || || || | || | || || || ||||||| || ||| Sbjct 55042 CCGACCAAGAAGTCTCAGACCTTCACCACGTACGCGGACAACCAGCCAGGAGTGCTGATT 54983 Query 350507 CAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACC 350566 || || | |||||||| ||||| || ||||| || || || || |||| | Sbjct 54982 CAGGTGTACGAAGGTGAGCGTGCGATGACCAAAGACAACAACCTCCTGGGCAAATTCCAC 54923 Query 350567 CTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATT 350626 || || || || || || | || || || || || |||||| |||||||||| Sbjct 54922 CTGGATGGTATCCCCCCCGCCCCCCGTGGTGTCCCCCAAATCGAAGTCACTTTCGATATC 54863 Query 350627 GATTCAAATGGTAT 350640 || | || ||||| Sbjct 54862 GACGCTAACGGTAT 54849 >seq1348 Length=13918 Score = 143 bits (158), Expect = 8e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | | ||| | || ||||| ||||| || ||||| || || || || Sbjct 302 ACCACCACGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGA 243 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | ||||| || || || | || || |||||||| || ||||| ||||||||||| || Sbjct 242 CAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGG 183 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| ||||| || ||||| || || || || || || || || | ||| || || ||||| Sbjct 182 AATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAAC 123 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 ||||| || | ||||| || || || || || ||||| ||||||||| Sbjct 122 ATCAAGCGTGATGGTCTTCCCAGTAAGAGTCTTCACAAAGATCTGCATT 74 >seq1347 Length=520 Score = 143 bits (158), Expect = 8e-29 Identities = 158/209 (76%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || ||||| ||||| || ||||| || || || || | ||||| || || || | Sbjct 208 CAAG-TGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGGCCGTCCTCCA 150 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 || || |||||||| || ||||| ||||||||||| ||||| ||||| || ||||| | Sbjct 149 ACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGA 90 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || || || || || | ||| || || ||||| ||||| || | ||||| | Sbjct 89 TCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACATCAAGCGTGATGGTCTTCC 30 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCATT 140738 |||| || || || ||||| ||||||||| Sbjct 29 CGGTAAGAGTCTTCACAAAGATCTGCATT 1 Score = 143 bits (158), Expect = 8e-29 Identities = 158/209 (76%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || ||||| ||||| || ||||| || || || || | ||||| || || || | Sbjct 436 CAAG-TGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGGCCGTCCTCCA 378 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 || || |||||||| || ||||| ||||||||||| ||||| ||||| || ||||| | Sbjct 377 ACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGA 318 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || || || || || | ||| || || ||||| ||||| || | ||||| | Sbjct 317 TCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACATCAAGCGTGATGGTCTTCC 258 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCATT 140738 |||| || || || ||||| ||||||||| Sbjct 257 CGGTAAGAGTCTTCACAAAGATCTGCATT 229 >seq1346 Length=13467 Score = 140 bits (154), Expect = 1e-27 Identities = 157/209 (75%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || ||||| ||||| || ||||| || || || || | ||||| || || || | Sbjct 13304 CAAG-TGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGGCCGTCCTCCA 13246 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 || || |||||||| || ||||| ||||||||||| ||||| ||||| || ||||| | Sbjct 13245 ACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGA 13186 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || || || || || | || || || ||||| ||||| || | ||||| | Sbjct 13185 TCTTTGCCTTCACGTTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATGGTCTTCC 13126 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCATT 140738 |||| || || || ||||| ||||||||| Sbjct 13125 CGGTAAGAGTCTTCACAAAGATCTGCATT 13097 Score = 114 bits (126), Expect = 4e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || ||||| ||||||||||| ||||| ||||| || ||||| || || || Sbjct 13465 CCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCC 13406 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || || || || || | ||| || || ||||| ||||| || | ||||| ||||| || Sbjct 13405 TTCACGTTCTCGATGGTATCTGACGGCTCAACATCAAGCGTGATGGTCTTCCCGGTAAGA 13346 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || ||||| ||||||||| Sbjct 13345 GTCTTCACAAAGATCTGCATT 13325 >seq687 Length=105670 Score = 116 bits (128), Expect = 1e-20 Identities = 152/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || ||||| || || || || || || || || || | |||| || || || | Sbjct 92670 CAAG-TGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTCGA 92612 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || || || || || ||||| ||||| ||||| |||||||| || |||||||||| Sbjct 92611 GCTGCTTGCCTGCGAAAATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTGAA 92552 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || ||||| || || | || || || || || || | || | ||||| | Sbjct 92551 TCTTGGCCTTGACATTTTCGATGGTGTCGGAAGGCTCGACGTCCAAAGTGATCGTCTTGC 92492 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCATT 140738 |||| || || || || |||||||||||| Sbjct 92491 CGGTGAGCGTCTTCACGAAAATCTGCATT 92463 >seq251 Length=87891 Score = 91.5 bits (100), Expect = 4e-13 Identities = 74/86 (86%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 423764 GAGCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGG-CGAAAG-CCT 423821 ||||| ||||||||||||||| |||||||| ||||||||||| |||| | || | || Sbjct 62529 GAGCACGGATGCCCGAGTGGT-TAAGGGGGTGGACTTAAGATCCCCTGGTCTAACGACCG 62471 Query 423822 CGTGGGTTCAAACCCCACTCCGTGCA 423847 ||||||||| |||||||||||||||| Sbjct 62470 CGTGGGTTCGAACCCCACTCCGTGCA 62445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515143409035751