Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2236 141 1e-28 seq2856 118 1e-21 >seq2236 Length=21742 Score = 141 bits (156), Expect = 1e-28 Identities = 406/610 (67%), Gaps = 32/610 (5%) Strand=Plus/Plus Query 78762 GGCGAGTTCGCAT---GACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTT 78818 |||||||||||| | |||||| ||| || | | ||| |||||||||| | Sbjct 11758 GGCGAGTTCGCAGCTGGCCTCGAGAGCGGCAAAGTAG-ATACA--CTCGAAGATGTTTCT 11814 Query 78819 GTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGC 78878 ||| | |||| || | || |||||||| | || || | ||||||| | || || Sbjct 11815 GTTCAAGACGCGAGCTTCGGGGCTGTCGAACGGATAGCGAAGAAGCATGAAGGCGTCTGC 11874 Query 78879 CAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTT--TCGGGCCGCC 78936 || || ||||| || | | ||| |||||||| |||| ||||||||| ||| | | Sbjct 11875 GAGACCTTGGACTCCCAAACCGACAGGTCGGTGCCGCAAGTTGCTCTTCTTCG---CTTC 11931 Query 78937 TCGGTC-GGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACC----C 78991 | || | ||||| |||| |||||||| |||||||||| ||| | ||| | ||| | Sbjct 11932 TGGGACTGGGTAGTAGTTTCGATCGATCACGCGGTTCAAGTTTCTCGTCATGACTTTGAC 11991 Query 78992 GAGTCACCTCGTACAATTTGGCGAAATCAAAAT----GATTTCCT--TTGATGAAAGTCG 79045 || || | || || | || | || ||| | | || | | ||| | | Sbjct 11992 GATTCGCTTC----AAGTGTTCGTAGTCGAAAGTTCGGCTCTCGCGGTCCACGAACTTGG 12047 Query 79046 GTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGA 79105 | || | | || |||| |||||| || ||| |||||| ||| | | |||| || Sbjct 12048 GCAGCGAGACGGAGGCCAAGTTGCAGACAGCCACCTCGTCTTTGCTCGTATATTCGACGA 12107 Query 79106 TTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGT 79165 |||||||||||| || ||||||| || || | ||||||||||||||||||| | Sbjct 12108 CTTCTGTGCACAAGTTGCTGCACTTGATCGTTCCCAAGTTCTTCTGGTTGCTCTTCCGAT 12167 Query 79166 TACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAA-CG 79224 | || ||||| ||||| ||||||||||||||| ||||| | ||| || ||||| || Sbjct 12168 TGCATGCGTCTTTGTACAGCATGTACGGCGTCCCCGTCTCGATCTGCGCCTGGAGAATCG 12227 Query 79225 CCGTCC-CAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCG-ACGTACG 79282 | || ||||| | | || | | |||| | ||| ||| ||| |||| Sbjct 12228 CAAACCAAAGATG--CTGAGCTGGAATCGTCTTCCGGCCTCGA-CCTTCGCGTTCGTAGC 12284 Query 79283 TCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCG 79342 | ||||||||| ||||| | || || | || || | || || ||||| |||| | Sbjct 12285 GCTCGTACAACTCTTTGAATTCGTCGCCCCACACCTCCGTCAAACCGGGGCATTCGTTAG 12344 Query 79343 GGCACATCAG 79352 |||||||||| Sbjct 12345 GGCACATCAG 12354 Score = 116 bits (128), Expect = 4e-21 Identities = 241/355 (68%), Gaps = 4/355 (1%) Strand=Plus/Plus Query 79381 TCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCG 79440 ||||||||||| || |||||||| ||||| |||||||||||| || ||| || Sbjct 12775 TCCATGAAGAGATCTGGGATCCAGAGGGCGCAGAAGAGGTCGCGCGCCCGTCGCTCTTCC 12834 Query 79441 TCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGA 79500 | ||| |||||| | ||||| || || | | || |||||| || |||| Sbjct 12835 TTGCCATGGTTCTTCTTGATGTCGAGGAAATCAAAAACATCAAAGTGCCAAGGTTCCAAG 12894 Query 79501 TAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTG 79560 || ||||||| || ||||| |||||||||||||||| |||||| || || | || | Sbjct 12895 TAAATGGCGAGGCTGCCTTTGCGTTTGCCGCCGCCCTGGTCGACGTAGCGCGCGGCGTCG 12954 Query 79561 TTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGAT-TCG 79619 ||||| |||| |||||| |||| | ||| | | | ||| ||||| || ||| | | Sbjct 12955 TTGAAGACTCTGAGCATCGGCAGAAGGCCATTCGAGTAGCCATTCGTTCCTCGGATGTAG 13014 Query 79620 -TGTACCGCTCGCCCGAATGTTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGA 79678 ||| | || ||||||| | | || |||| |||||| | |||||| | Sbjct 13015 CTGT--TTGTGGCTCGAATGTCTGTCACGGCGAGACCGAGGCCCCCAGCTGTCTTGGAAA 13072 Query 79679 TGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCAT 79733 | |||||| | ||| || || | | || || ||||||||||| || | ||| Sbjct 13073 TCAACGCGCATTGCTTCAGTGTGCTGAAAATTCCATCGATCGAGTCCTCTTGCAT 13127 Score = 104 bits (114), Expect = 3e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 19424 CCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGC 19483 || |||||| | ||||||||| || | || | |||||| ||||||| |||||||||||| Sbjct 12974 CCGATGCTCAGAGTCTTCAACGACGCCGCGCGCTACGTCGACCAGGGCGGCGGCAAACGC 12915 Query 19484 AAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAA 19543 || ||| ||||||| ||| | || || |||||| || || | ||||||||||| Sbjct 12914 AAAGGCAGCCTCGCCATTTACTTGGAACCTTGGCACTTTGATGTTTTTGATTTCCTCGAC 12855 Query 19544 CTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGG 19603 | |||||| || | || ||| || |||||||||||| ||| | ||| Sbjct 12854 ATCAAGAAGAACCATGGCAAGGAAGAGCGACGGGCGCGCGACCTCTTCTGCGCCCTCTGG 12795 Query 19604 ATTCCGGACCTATTCATGGA 19623 || || || || |||||||| Sbjct 12794 ATCCCAGATCTCTTCATGGA 12775 Score = 93.3 bits (102), Expect = 5e-14 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 19165 CGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAA 19224 ||| || ||||| |||||||| ||||||||||||||||| || ||||||||||| ||||| Sbjct 13525 CGAAACCTACGAACTGATGAGTCAGAAGTTCTTCACGCATGCAACGCCGACCCTGTTCAA 13466 Query 19225 CGCCGGTACGAACAACCCGCAGATGTCGAGCTGT 19258 |||||| || | ||| |||||| |||||| Sbjct 13465 CGCCGGCACCCCCCGCCCACAGATGAGCAGCTGT 13432 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 79747 CAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTG 79806 ||||| |||||||||| | || ||||||||||| ||||||||||| || |||||| Sbjct 13433 CAGCTGCTCATCTGTGGGCGGGGGGTGCCGGCGTTGAACAGGGTCGGCGTTGCATGCGTG 13492 Query 79807 AAGAACTTTTGGCTCATCAGATCGTACGTCTC 79838 |||||||| || |||||||| ||||| || || Sbjct 13493 AAGAACTTCTGACTCATCAGTTCGTAGGTTTC 13524 Score = 86.0 bits (94), Expect = 7e-12 Identities = 144/203 (71%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 78199 TAGTACATGCCCGTCTTGAGACC-CTTCTTCCATCCGTACAGGTGCATACTCGACAGCTT 78257 ||||||| || || || || || | ||| ||| ||||| | ||||||| | || ||||| Sbjct 10283 TAGTACAGCCCAGTTTTCAGGCCGCCTCT-CCAGCCGTAAAAGTGCATAGTGGAGAGCTT 10341 Query 78258 GGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATGTACGCACC 78317 || | || || ||||| |||||| ||||| || |||||||||||| ||| | Sbjct 10342 CGCGTAGGTTGGATTGACCATGTGGATGTTCAGCGAGTGAGACTGGTCGATGAACGGTGC 10401 Query 78318 GCGGTCGGCCGCCATGTCGATGACCGAC-TTTTGCGGAATCTCCCAGATGGTCCGGTAAA 78376 |||||| ||||| ||||| || |||| ||| |||||||| | |||| ||| | Sbjct 10402 CCGGTCGATCGCCAGGTCGAGGA-CGACGCGCTGCTTGATCTCCCAAACGGTCTTGTACA 10460 Query 78377 TGGCCTTCAGCTCTTCCTGGATG 78399 ||||||| || || ||||| Sbjct 10461 GTGCCTTCAAGTCGTCTGGGATG 10483 >seq2856 Length=43924 Score = 118 bits (130), Expect = 1e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 59993 TTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAA 60052 ||||||||| |||||||| || |||| ||| ||||| |||||||||||||| || Sbjct 22082 TTTTGCATGTGTGGAAGGCATTCTCTTTAGTGGAAGCTTCTGCGCTATTTTCTGGCTGAA 22023 Query 60053 AAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGG 60112 ||||||||| | ||||||||||| | |||||| |||||| ||||||| || ||||| || Sbjct 22022 GAAGCGTGGCTTGATGCCGGGCCTCACTTTCTCAAACGAGTTGATTTCTCGCGACGAAGG 21963 Query 60113 CCTCCATCAGGAGTTTGC 60130 || ||| || ||||| Sbjct 21962 ACTGCATGCAGACTTTGC 21945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548485601046480