Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1347 174 2e-38 seq1346 170 2e-37 seq1348 168 8e-37 seq687 165 9e-36 seq2856 105 8e-18 >seq1347 Length=520 Score = 174 bits (192), Expect = 2e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| |||||||| ||||| || || ||||| |||||| | Sbjct 1 AATGCAGATCTTTGTGAAGACTCTTACCGGGAAGACCATCACGCTTGATGTTGAGCCGTC 60 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | || ||||||| || || ||||||||||| || ||||| || || || Sbjct 61 AGATACCATCGAGAACGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCA 120 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| ||||||||||| ||||| | ||||| | || || || | ||||| || Sbjct 121 GCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCCGACTACAA 180 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || ||||| || ||||| || | || |||||||||||||| ||| Sbjct 181 CATTCAGAAGGAGTCGACTCTCCACTTGGTTTTGCGTCTTCGCGGAGGA 229 Score = 174 bits (192), Expect = 2e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| |||||||| ||||| || || ||||| |||||| | Sbjct 229 AATGCAGATCTTTGTGAAGACTCTTACCGGGAAGACCATCACGCTTGATGTTGAGCCGTC 288 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | || ||||||| || || ||||||||||| || ||||| || || || Sbjct 289 AGATACCATCGAGAACGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCA 348 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| ||||||||||| ||||| | ||||| | || || || | ||||| || Sbjct 349 GCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCCGACTACAA 408 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || ||||| || ||||| || | || |||||||||||||| ||| Sbjct 409 CATTCAGAAGGAGTCGACTCTCCACTTGGTTTTGCGTCTTCGCGGAGGA 457 >seq1346 Length=13467 Score = 170 bits (188), Expect = 2e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| |||||||| ||||| || || ||||| |||||| | Sbjct 13097 AATGCAGATCTTTGTGAAGACTCTTACCGGGAAGACCATCACGCTTGATGTTGAGCCGTC 13156 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | || ||||||| || || ||||||||||| || ||||| || || || Sbjct 13157 AGACACCATCGAGAACGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCA 13216 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| ||||||||||| ||||| | ||||| | || || || | ||||| || Sbjct 13217 GCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCCGACTACAA 13276 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || ||||| || ||||| || | || |||||||||||||| ||| Sbjct 13277 CATTCAGAAGGAGTCGACTCTCCACTTGGTTTTGCGTCTTCGCGGAGGA 13325 Score = 129 bits (142), Expect = 7e-25 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| |||||||| ||||| || || ||||| |||||| | Sbjct 13325 AATGCAGATCTTTGTGAAGACTCTTACCGGGAAGACCATCACGCTTGATGTTGAGCCGTC 13384 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | || ||||||| || || ||||||||||| || ||||| || || || Sbjct 13385 AGATACCATCGAGAACGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCA 13444 Query 27525 GCAGCGTCTAATTTTTGCTGG 27545 ||||||||| ||||||||||| Sbjct 13445 GCAGCGTCTGATTTTTGCTGG 13465 >seq1348 Length=13918 Score = 168 bits (186), Expect = 8e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| ||||| || ||||| || || ||||| |||||| | Sbjct 74 AATGCAGATCTTTGTGAAGACTCTTACTGGGAAGACCATCACGCTTGATGTTGAGCCGTC 133 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | || ||||||| || || ||||||||||| || ||||| || || || Sbjct 134 AGATACCATCGAGAACGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCA 193 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| ||||||||||| ||||| | ||||| | || || || | ||||| || Sbjct 194 GCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCCGACTACAA 253 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || ||||| || | || ||||||||||| ||||| Sbjct 254 CATTCAGAAGGAGTCGACTCTCCACTTGGTTTTGCGTCTTCGTGGTGG 301 >seq687 Length=105670 Score = 165 bits (182), Expect = 9e-36 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || |||||||| ||||||||||| || ||| | || || ||| | Sbjct 92463 AATGCAGATTTTCGTGAAGACGCTCACCGGCAAGACGATCACTTTGGACGTCGAGCCTTC 92522 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | |||| | ||||| || |||||||| |||||||||||||| || ||||| Sbjct 92523 CGACACCATCGAAAATGTCAAGGCCAAGATTCAGGATAAGGAGGGAATTCCGCCTGACCA 92582 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| ||||| || || ||||| |||||||| | | ||||| | ||||| || Sbjct 92583 GCAGCGTCTGATTTTCGCAGGCAAGCAGCTCGAGGACGGCAGAACCCTTTCCGACTACAA 92642 Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608 |||| |||||||||||||| || Sbjct 92643 CATCCAGAAGGAATCCACTCTCCA 92666 >seq2856 Length=43924 Score = 105 bits (116), Expect = 8e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 64728 TTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAA 64787 |||||| ||||||||||| ||| ||||| ||| ||||| ||||||||||||| || Sbjct 22082 TTTTGCATGTGTGGAAGGCATTCTCTTTAGTGGAAGCTTCTGCGCTATTTTCTGGCTGAA 22023 Query 64788 AAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGG 64847 ||||| ||| ||||||| || || | || || |||||| |||| ||||| ||||| || Sbjct 22022 GAAGCGTGGCTTGATGCCGGGCCTCACTTTCTCAAACGAGTTGATTTCTCGCGACGAAGG 21963 Query 64848 GCTCCACCAAGAATTTGC 64865 || || ||| ||||| Sbjct 21962 ACTGCATGCAGACTTTGC 21945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570269644193040