Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1346 149 5e-31 seq1347 145 7e-30 seq1348 143 2e-29 >seq1346 Length=13467 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| ||||| ||| | || || ||||| || || ||||| Sbjct 13098 ATGCAGATCTTTGTGAAGACTCTTACCGGGAAGACCATCACGCTTGATGTTGAGCCGTCA 13157 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || ||| || || ||||| ||||| || || || ||||| Sbjct 13158 GACACCATCGAGAACGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAG 13217 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| || ||||| ||| | || | ||||| |||||| Sbjct 13218 CAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCCGACTACAAC 13277 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||||||||| | || |||||||||||| | || || || || Sbjct 13278 ATTCAGAAGGAGTCGACTCTCCACTTGGTTTTGCGTCTTCGCGGAGGAAT 13327 >seq1347 Length=520 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| ||||| ||| | || || ||||| || || ||||| Sbjct 2 ATGCAGATCTTTGTGAAGACTCTTACCGGGAAGACCATCACGCTTGATGTTGAGCCGTCA 61 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || || ||| || || ||||| ||||| || || || ||||| Sbjct 62 GATACCATCGAGAACGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAG 121 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| || ||||| ||| | || | ||||| |||||| Sbjct 122 CAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCCGACTACAAC 181 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||||||||| | || |||||||||||| | || || || || Sbjct 182 ATTCAGAAGGAGTCGACTCTCCACTTGGTTTTGCGTCTTCGCGGAGGAAT 231 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| ||||| ||| | || || ||||| || || ||||| Sbjct 230 ATGCAGATCTTTGTGAAGACTCTTACCGGGAAGACCATCACGCTTGATGTTGAGCCGTCA 289 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || || ||| || || ||||| ||||| || || || ||||| Sbjct 290 GATACCATCGAGAACGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAG 349 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| || ||||| ||| | || | ||||| |||||| Sbjct 350 CAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCCGACTACAAC 409 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||||||||| | || |||||||||||| | || || || || Sbjct 410 ATTCAGAAGGAGTCGACTCTCCACTTGGTTTTGCGTCTTCGCGGAGGAAT 459 >seq1348 Length=13918 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| || || ||| | || || ||||| || || ||||| Sbjct 75 ATGCAGATCTTTGTGAAGACTCTTACTGGGAAGACCATCACGCTTGATGTTGAGCCGTCA 134 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || || ||| || || ||||| ||||| || || || ||||| Sbjct 135 GATACCATCGAGAACGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAG 194 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| || ||||| ||| | || | ||||| |||||| Sbjct 195 CAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCCGACTACAAC 254 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| ||||||||||| | || |||||||||||| | || ||||| Sbjct 255 ATTCAGAAGGAGTCGACTCTCCACTTGGTTTTGCGTCTTCGTGGTGG 301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434887319643840