Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq687 170 4e-37 seq1346 161 2e-34 seq1348 154 3e-32 seq1347 154 3e-32 >seq687 Length=105670 Score = 170 bits (188), Expect = 4e-37 Identities = 162/207 (78%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| |||||||| || || |||||||| || || | |||||| || || || || ||||| Sbjct 92667 GTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTCGAGCTG 92608 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 |||||||||||| || || || || |||||||| |||| ||| ||||| ||||| ||||| Sbjct 92607 CTTGCCTGCGAAAATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTGAATCTT 92548 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || |||||||||||||| || || || || | |||||||||||| || || Sbjct 92547 GGCCTTGACATTTTCGATGGTGTCGGAAGGCTCGACGTCCAAAGTGATCGTCTTGCCGGT 92488 Query 211091 GAGAGTCTTTACAAACACCTGCATTTT 211117 ||| ||||| || || | ||||||||| Sbjct 92487 GAGCGTCTTCACGAAAATCTGCATTTT 92461 >seq1346 Length=13467 Score = 161 bits (178), Expect = 2e-34 Identities = 160/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| ||||| ||||| || || ||||| || || | || || | || || |||| ||| Sbjct 13301 GTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGGCCGTCCTCCAACTG 13242 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 |||||| || || || || || || || ||||| |||| |||||||||||||||||||| Sbjct 13241 CTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTT 13182 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 | |||||||| ||||||||||| || ||||| || || ||||| ||||| || || Sbjct 13181 TGCCTTCACGTTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATGGTCTTCCCGGT 13122 Query 211091 GAGAGTCTTTACAAACACCTGCATTTT 211117 |||||||| ||||| | ||||||||| Sbjct 13121 AAGAGTCTTCACAAAGATCTGCATTTT 13095 Score = 116 bits (128), Expect = 9e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 210974 GCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTG 211033 ||| || || || || || || || ||||| |||| ||||||||||||||||||||| Sbjct 13466 GCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGC 13407 Query 211034 TTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093 |||||||| |||||||| || || ||||| || || ||||| ||||| || || || Sbjct 13406 CTTCACGTTCTCGATGGTATCTGACGGCTCAACATCAAGCGTGATGGTCTTCCCGGTAAG 13347 Query 211094 AGTCTTTACAAACACCTGCATT 211115 |||||| ||||| | ||||||| Sbjct 13346 AGTCTTCACAAAGATCTGCATT 13325 >seq1348 Length=13918 Score = 154 bits (170), Expect = 3e-32 Identities = 168/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | | || | ||| ||||| ||||| || || ||||| || || | || || Sbjct 296 ACGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGT 237 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || |||| ||||||||| || || || || || || || ||||| |||| || Sbjct 236 TCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACC 177 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||||| |||||||| |||||||| || || ||||| || || Sbjct 176 TTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACATCAAG 117 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| ||||| || || |||||||| ||||| | ||||||| Sbjct 116 CGTGATGGTCTTCCCAGTAAGAGTCTTCACAAAGATCTGCATT 74 >seq1347 Length=520 Score = 154 bits (170), Expect = 3e-32 Identities = 157/205 (77%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| ||||| ||||| || || ||||| || || | || || | || || |||| ||| Sbjct 205 GTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGGCCGTCCTCCAACTG 146 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 |||||| || || || || || || || ||||| |||| |||||||||||||||||||| Sbjct 145 CTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTT 86 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 | |||||||| |||||||| || || ||||| || || ||||| ||||| || || Sbjct 85 TGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACATCAAGCGTGATGGTCTTCCCGGT 26 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 |||||||| ||||| | ||||||| Sbjct 25 AAGAGTCTTCACAAAGATCTGCATT 1 Score = 154 bits (170), Expect = 3e-32 Identities = 157/205 (77%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| ||||| ||||| || || ||||| || || | || || | || || |||| ||| Sbjct 433 GTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGGCCGTCCTCCAACTG 374 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 |||||| || || || || || || || ||||| |||| |||||||||||||||||||| Sbjct 373 CTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTT 314 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 | |||||||| |||||||| || || ||||| || || ||||| ||||| || || Sbjct 313 TGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACATCAAGCGTGATGGTCTTCCCGGT 254 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 |||||||| ||||| | ||||||| Sbjct 253 AAGAGTCTTCACAAAGATCTGCATT 229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159067093202705