Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1348 82.4 7e-11 seq1347 82.4 7e-11 >seq1348 Length=13918 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || || ||| || || || || || |||| || ||||| || Sbjct 289 CGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGGCCG 230 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | ||| ||||| ||||| || ||||||||||| || | ||| | | || ||| Sbjct 229 TCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTG 170 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| ||| || || | || | | ||||| || ||| || || | |||||| Sbjct 169 TCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACATCAAGCGTGATG 110 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || || || |||||||| ||||| Sbjct 109 GTCTTCCCAGTAAGAGTCTTCACAAAGATCTGCAT 75 >seq1347 Length=520 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || || ||| || || || || || |||| || ||||| || Sbjct 216 CGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGGCCG 157 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | ||| ||||| ||||| || ||||||||||| || | ||| | | || ||| Sbjct 156 TCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTG 97 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| ||| || || | || | | ||||| || ||| || || | |||||| Sbjct 96 TCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACATCAAGCGTGATG 37 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || || || |||||||| ||||| Sbjct 36 GTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCAT 2 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || || ||| || || || || || |||| || ||||| || Sbjct 444 CGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGGCCG 385 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | ||| ||||| ||||| || ||||||||||| || | ||| | | || ||| Sbjct 384 TCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTG 325 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| ||| || || | || | | ||||| || ||| || || | |||||| Sbjct 324 TCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACATCAAGCGTGATG 265 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || || || |||||||| ||||| Sbjct 264 GTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCAT 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429515671007621