Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq687 152 1e-31 seq1346 143 6e-29 seq1348 136 9e-27 seq1347 134 3e-26 seq5716 118 3e-21 seq5393 118 3e-21 >seq687 Length=105670 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||||||||||||||| || |||| ||||| |||| | ||||| || || || ||||| Sbjct 92667 GTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTCGAGCTG 92608 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || ||||| || || || || ||||| |||||||| || ||||| || || ||||| Sbjct 92607 CTTGCCTGCGAAAATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTGAATCTT 92548 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| ||| |||||||||||| || | || ||||| || |||||||||||||| || Sbjct 92547 GGCCTTGACATTTTCGATGGTGTCGGAAGGCTCGACGTCCAAAGTGATCGTCTTGCCGGT 92488 Query 225690 CAAAGTTTTTATGAACACTTGCATTTT 225716 | || || | ||| | |||||||| Sbjct 92487 GAGCGTCTTCACGAAAATCTGCATTTT 92461 >seq1346 Length=13467 Score = 143 bits (158), Expect = 6e-29 Identities = 166/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || | ||||||||| || || || || | ||||| |||| || |||| Sbjct 13318 CGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTT 13259 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || | |||||| ||||| || || || || || || || || ||||||||| Sbjct 13258 CGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCT 13199 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| ||||||||| |||||| |||||||||||||| | || || || | | Sbjct 13198 TCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTGTCTGACGGCTCAACATCAAGC 13139 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||| || || | ||| || | || | |||||||| Sbjct 13138 GTGATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCATTTT 13095 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||| || || || || || || || || ||||||||||||||||| ||||||||| | Sbjct 13465 CCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCC 13406 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 ||||| |||||||| ||||| | || || || | |||||| ||||| || || | | Sbjct 13405 TTCACGTTCTCGATGGTATCTGACGGCTCAACATCAAGCGTGATGGTCTTCCCGGTAAGA 13346 Query 225694 GTTTTTATGAACACTTGCATT 225714 || || | || | |||||| Sbjct 13345 GTCTTCACAAAGATCTGCATT 13325 >seq1348 Length=13918 Score = 136 bits (150), Expect = 9e-27 Identities = 164/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||||||||| || || || || | ||||| |||| || ||| Sbjct 296 ACGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGT 237 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || || || || | |||||| ||||| || || || || || || || || |||||||| Sbjct 236 TCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACC 177 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| ||||||||| |||||| |||||||| ||||| | || || || | Sbjct 176 TTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACATCAAG 117 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||||| ||||| || || | ||| || | || | |||||| Sbjct 116 CGTGATGGTCTTCCCAGTAAGAGTCTTCACAAAGATCTGCATT 74 >seq1347 Length=520 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || | ||||||||| || || || || | ||||| |||| || |||| Sbjct 222 CGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTT 163 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || | |||||| ||||| || || || || || || || || ||||||||| Sbjct 162 CGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCT 103 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| ||||||||| |||||| |||||||| ||||| | || || || | | Sbjct 102 TCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACATCAAGC 43 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| ||||| || || | ||| || | || | |||||| Sbjct 42 GTGATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCATT 1 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || | ||||||||| || || || || | ||||| |||| || |||| Sbjct 450 CGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTT 391 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || | |||||| ||||| || || || || || || || || ||||||||| Sbjct 390 CGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCT 331 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| ||||||||| |||||| |||||||| ||||| | || || || | | Sbjct 330 TCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACATCAAGC 271 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| ||||| || || | ||| || | || | |||||| Sbjct 270 GTGATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCATT 229 >seq5716 Length=452 Score = 118 bits (130), Expect = 3e-21 Identities = 108/135 (80%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 7728 TCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTAT 7787 ||||| ||||||| || | |||||| ||| ||||||| |||| ||||||||||| | Sbjct 186 TCTAGTTCTGGTAAGGTTTATCGCGTTACATCGAATTAAATTACATGCTCCACCGCTTGT 245 Query 7788 ACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA 7847 || | | |||||| || |||||||||| | ||||||| |||| |||||||| |||||| Sbjct 246 ACGAGCCCCCGTCAATTCCTTTGAGTTTCACCCTTGCGAGCGTACTACTCAGGCGGAATA 305 Query 7848 -TTTACGCGTTAGCT 7861 || ||||||||||| Sbjct 306 CTTAACGCGTTAGCT 320 >seq5393 Length=243 Score = 118 bits (130), Expect = 3e-21 Identities = 170/239 (71%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 7489 TTTTCTATGATTATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAAT 7548 |||||| | | || || ||||||||| || || ||| |||| || | || |||| Sbjct 7 TTTTCTGTATTGATTAGATTAGAATTAAGTGGACCTGGTGTTCAA---TTTATTGCTAAT 63 Query 7549 AGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTT 7608 | ||| | || ||| ||| ||||| || ||||| | | |||||||| || | ||| Sbjct 64 AATCAATTATATAACAGTATAATTACAGCTCATGCTATATTAATGATTTTTTTCATGGTT 123 Query 7609 ATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCT 7668 ||||| | | | ||||| || || || || | || | ||||||||| | || | |||| Sbjct 124 ATGCCTGCTTTAATAGGAGGATTTGGTAACTTCTTAATGCCTTTAATGGTAGGAGGTCCT 183 Query 7669 GATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 |||||||| || || || | || ||||| |||||||||||| |||| ||| ||||| Sbjct 184 GATATGGCATTCCCTAGATTAAATAATATTAGTTTTTGATTATTACCACCTAGTTTATT 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192443848207598