Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq687 125 2e-23 seq1346 102 2e-16 seq1348 95.1 3e-14 seq1347 95.1 3e-14 >seq687 Length=105670 Score = 125 bits (138), Expect = 2e-23 Identities = 157/214 (73%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| || || || ||||||||||| |||| | ||||| || || || | Sbjct 92670 CAAG-TGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTCGA 92612 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || ||||| || || | ||||||||| | || ||||| ||||| || |||| Sbjct 92611 GCTGCTTGCCTGCGAAAATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTGAA 92552 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| | || | | |||| ||| ||| || || | ||| || || |||| Sbjct 92551 TCTTGGCCTTGACATTTTCGATGGTGTCGGAAGGCTCGACGTCCAAAGTGATCGTCTTGC 92492 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110 | ||||| ||||||||||| | ||||||||| || Sbjct 92491 CGGTGAGCGTCTTCACGAAAATCTGCATTTTGCC 92458 >seq1346 Length=13467 Score = 102 bits (112), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| || || |||||||| |||| | ||||| || || || | Sbjct 13304 CAAG-TGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGGCCGTCCTCCA 13246 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || || || || | |||||| || | | || |||||||| || || | Sbjct 13245 ACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGA 13186 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| || || |||| | | ||||||| ||| || ||||| || || || || | Sbjct 13185 TCTTTGCCTTCACGTTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATGGTCTTCC 13126 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || ||||||||||| |||| ||||||||| Sbjct 13125 CGGTAAGAGTCTTCACAAAGATCTGCATTTT 13095 >seq1348 Length=13918 Score = 95.1 bits (104), Expect = 3e-14 Identities = 147/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| || || |||||||| |||| | ||||| || || || | Sbjct 281 CAAG-TGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGGCCGTCCTCCA 223 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || || || || | |||||| || | | || |||||||| || || | Sbjct 222 ACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGA 163 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| || || |||| | | | ||||| ||| || ||||| || || || || | Sbjct 162 TCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACATCAAGCGTGATGGTCTTCC 103 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || ||||||||||| |||| ||||||| Sbjct 102 CAGTAAGAGTCTTCACAAAGATCTGCATT 74 >seq1347 Length=520 Score = 95.1 bits (104), Expect = 3e-14 Identities = 147/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| || || |||||||| |||| | ||||| || || || | Sbjct 208 CAAG-TGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGGCCGTCCTCCA 150 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || || || || | |||||| || | | || |||||||| || || | Sbjct 149 ACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGA 90 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| || || |||| | | | ||||| ||| || ||||| || || || || | Sbjct 89 TCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACATCAAGCGTGATGGTCTTCC 30 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || ||||||||||| |||| ||||||| Sbjct 29 CGGTAAGAGTCTTCACAAAGATCTGCATT 1 Score = 95.1 bits (104), Expect = 3e-14 Identities = 147/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| || || |||||||| |||| | ||||| || || || | Sbjct 436 CAAG-TGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGGCCGTCCTCCA 378 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || || || || | |||||| || | | || |||||||| || || | Sbjct 377 ACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGA 318 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| || || |||| | | | ||||| ||| || ||||| || || || || | Sbjct 317 TCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACATCAAGCGTGATGGTCTTCC 258 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || ||||||||||| |||| ||||||| Sbjct 257 CGGTAAGAGTCTTCACAAAGATCTGCATT 229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153736283708107