Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq687 154 3e-32 seq1346 143 6e-29 seq1348 138 2e-27 seq1347 134 3e-26 >seq687 Length=105670 Score = 154 bits (170), Expect = 3e-32 Identities = 151/195 (77%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| || |||||||||||||| | ||| || | ||| ||||| || || || || || || Sbjct 92655 TTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTCGAGCTGCTTGCCTGCGAA 92596 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||| ||| || |||||| |||||| |||||||| || || ||||| || || || | Sbjct 92595 AATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTGAATCTTGGCCTTGACATT 92536 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||| ||||| |||| ||||| || | |||||||||||| || || | ||||| || Sbjct 92535 TTCGATGGTGTCGGAAGGCTCGACGTCCAAAGTGATCGTCTTGCCGGTGAGCGTCTTCAC 92476 Query 283088 GAATATCTGCATTTT 283102 ||| ||||||||||| Sbjct 92475 GAAAATCTGCATTTT 92461 >seq1346 Length=13467 Score = 143 bits (158), Expect = 6e-29 Identities = 148/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || ||||||||||| | || || ||||| ||||| | || || || ||||| Sbjct 13288 TCCTTCTGAATGTTGTAGTCGGACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAA 13229 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| ||| || || ||| |||||||| |||||||| ||||||||||| || ||| | Sbjct 13228 ATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTC 13169 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| || | || || || || ||||| ||||| || || | |||||| || Sbjct 13168 TCGATGGTGTCTGACGGCTCAACATCAAGCGTGATGGTCTTCCCGGTAAGAGTCTTCACA 13109 Query 283089 AATATCTGCATTTT 283102 || ||||||||||| Sbjct 13108 AAGATCTGCATTTT 13095 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| |||| ||| || || ||| |||||||| |||||||| ||||||||||| Sbjct 13465 CCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCC 13406 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| || || || | || || || || ||||| ||||| || || | | Sbjct 13405 TTCACGTTCTCGATGGTATCTGACGGCTCAACATCAAGCGTGATGGTCTTCCCGGTAAGA 13346 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||| || || ||||||||| Sbjct 13345 GTCTTCACAAAGATCTGCATT 13325 >seq1348 Length=13918 Score = 138 bits (152), Expect = 2e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | |||| || | || || || || ||||||||||| | Sbjct 302 ACCACCACGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGA 243 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| ||||| | || || || ||||| |||| ||| || || ||| || Sbjct 242 CAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGG 183 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| |||||||| ||||||||||| || ||| | ||||| || || || | || || Sbjct 182 AATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAAC 123 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || ||||| ||||| || || | |||||| || || ||||||||| Sbjct 122 ATCAAGCGTGATGGTCTTCCCAGTAAGAGTCTTCACAAAGATCTGCATT 74 >seq1347 Length=520 Score = 134 bits (148), Expect = 3e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || ||||||||||| | || || ||||| ||||| | || || || ||||| Sbjct 192 TCCTTCTGAATGTTGTAGTCGGACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAA 133 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| ||| || || ||| |||||||| |||||||| ||||||||||| || ||| | Sbjct 132 ATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTC 73 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| || || || | || || || || ||||| ||||| || || | |||||| || Sbjct 72 TCGATGGTATCTGACGGCTCAACATCAAGCGTGATGGTCTTCCCGGTAAGAGTCTTCACA 13 Query 283089 AATATCTGCATT 283100 || ||||||||| Sbjct 12 AAGATCTGCATT 1 Score = 134 bits (148), Expect = 3e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || ||||||||||| | || || ||||| ||||| | || || || ||||| Sbjct 420 TCCTTCTGAATGTTGTAGTCGGACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAA 361 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| ||| || || ||| |||||||| |||||||| ||||||||||| || ||| | Sbjct 360 ATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTC 301 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| || || || | || || || || ||||| ||||| || || | |||||| || Sbjct 300 TCGATGGTATCTGACGGCTCAACATCAAGCGTGATGGTCTTCCCGGTAAGAGTCTTCACA 241 Query 283089 AATATCTGCATT 283100 || ||||||||| Sbjct 240 AAGATCTGCATT 229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046662527334918