Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq687 141 2e-28 seq1346 118 3e-21 seq1348 113 1e-19 seq1347 113 1e-19 >seq687 Length=105670 Score = 141 bits (156), Expect = 2e-28 Identities = 161/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | ||||||||||| || ||||| || || |||||||| | || || || Sbjct 92461 AAAATGC---AGATTTTCGTGAAGACGCTCACCGGCAAGACGATCACTTTGGACGTCGAG 92517 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || ||||||||||| || ||||| ||||||||||| || || ||||| || || Sbjct 92518 CCTTCCGACACCATCGAAAATGTCAAGGCCAAGATTCAGGATAAGGAGGGAATTCCGCCT 92577 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 |||||||| || || || ||||| || || |||||||| || || || || ||| |||| Sbjct 92578 GACCAGCAGCGTCTGATTTTCGCAGGCAAGCAGCTCGAGGACGGCAGAACCCTTTCCGAC 92637 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || ||| |||| || ||||| || || || |||| Sbjct 92638 TACAACATCCAGAAGGAATCCACTCTCCA-CTTG 92670 >seq1346 Length=13467 Score = 118 bits (130), Expect = 3e-21 Identities = 158/219 (72%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || ||||| ||||| || || || || ||||| || || || || Sbjct 13095 AAAATGC---AGATCTTTGTGAAGACTCTTACCGGGAAGACCATCACGCTTGATGTTGAG 13151 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 |||||||||||||||||||| || |||||| |||||||| ||||| || || || Sbjct 13152 CCGTCAGACACCATCGAGAACGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCT 13211 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| || || || || || || || ||| | || || || | ||||| |||| Sbjct 13212 GATCAGCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCCGAC 13271 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || ||| | || || || || || || || | |||||| Sbjct 13272 TACAACATTCAGAAGGAGTCGACTCTCCACTTGGTTTTG 13310 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| ||||| || || || || ||||| || || || || ||||| Sbjct 13329 CAGATCTTTGTGAAGACTCTTACCGGGAAGACCATCACGCTTGATGTTGAGCCGTCAGAT 13388 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || |||||| |||||||| ||||| || || || || ||||| Sbjct 13389 ACCATCGAGAACGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAGCAG 13448 Query 178044 CGACTTATCTTCGCCGG 178060 || || || || || || Sbjct 13449 CGTCTGATTTTTGCTGG 13465 >seq1348 Length=13918 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| ||||| || || || || ||||| || || || || ||||| Sbjct 78 CAGATCTTTGTGAAGACTCTTACTGGGAAGACCATCACGCTTGATGTTGAGCCGTCAGAT 137 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || |||||| |||||||| ||||| || || || || ||||| Sbjct 138 ACCATCGAGAACGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAGCAG 197 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || || ||| | || || || | ||||| |||| || ||| | Sbjct 198 CGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCCGACTACAACATT 257 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || || || || || || | |||||| Sbjct 258 CAGAAGGAGTCGACTCTCCACTTGGTTTTG 287 >seq1347 Length=520 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| ||||| || || || || ||||| || || || || ||||| Sbjct 5 CAGATCTTTGTGAAGACTCTTACCGGGAAGACCATCACGCTTGATGTTGAGCCGTCAGAT 64 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || |||||| |||||||| ||||| || || || || ||||| Sbjct 65 ACCATCGAGAACGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAGCAG 124 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || || ||| | || || || | ||||| |||| || ||| | Sbjct 125 CGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCCGACTACAACATT 184 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || || || || || || | |||||| Sbjct 185 CAGAAGGAGTCGACTCTCCACTTGGTTTTG 214 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| ||||| || || || || ||||| || || || || ||||| Sbjct 233 CAGATCTTTGTGAAGACTCTTACCGGGAAGACCATCACGCTTGATGTTGAGCCGTCAGAT 292 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || |||||| |||||||| ||||| || || || || ||||| Sbjct 293 ACCATCGAGAACGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAGCAG 352 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || || ||| | || || || | ||||| |||| || ||| | Sbjct 353 CGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCCGACTACAACATT 412 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || || || || || || | |||||| Sbjct 413 CAGAAGGAGTCGACTCTCCACTTGGTTTTG 442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203643027818098