Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq687 127 2e-24 seq1346 125 7e-24 seq1347 116 3e-21 seq1348 113 4e-20 >seq687 Length=105670 Score = 127 bits (140), Expect = 2e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| || || ||| |||||||| ||||| |||||||| ||||| | |||| || Sbjct 92673 CACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTC 92614 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 |||||||||||| ||||| ||||| ||||| ||||| | |||| | |||||| ||| | Sbjct 92613 GAGCTGCTTGCCTGCGAAAATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCC-T 92555 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 || | || || | || | | |||||| | ||| || |||| || ||||| | Sbjct 92554 GAATCTTGGCCTTGACATTTTCGATGGTGTCGGAAGGCTCGACGTCCAAAGTGATCGTCT 92495 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | || || |||||||| |||||||||||||| || Sbjct 92494 TGCCGGTGAGCGTCTTCACGAAAATCTGCATTTT 92461 >seq1346 Length=13467 Score = 125 bits (138), Expect = 7e-24 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| || |||| || || || ||||||||||||||| |||||||| Sbjct 13324 CCTCCGCGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAC 13265 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || | ||||||||| || || ||||| ||||| || || | |||| Sbjct 13264 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 13205 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||||||||| ||| ||| ||||| | | ||||| || ||| || Sbjct 13204 ATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTGTCTGACGGCTCAACA 13145 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATCGATGGA 41874 || | ||| || || || || || || ||||| || || |||||||| || |||| || Sbjct 13144 TCAAGCGTGATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCATTTTGGCGATAGA 13086 >seq1347 Length=520 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| || |||| || || || ||||||||||||||| |||||||| Sbjct 228 CCTCCGCGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAC 169 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || | ||||||||| || || ||||| ||||| || || | |||| Sbjct 168 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 109 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||||||||| ||| ||| ||||| | | || || || ||| || Sbjct 108 ATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACA 49 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||| || || || || || || ||||| || || |||||||| Sbjct 48 TCAAGCGTGATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCAT 2 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| || |||| || || || ||||||||||||||| |||||||| Sbjct 456 CCTCCGCGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAC 397 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || | ||||||||| || || ||||| ||||| || || | |||| Sbjct 396 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 337 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||||||||| ||| ||| ||||| | | || || || ||| || Sbjct 336 ATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACA 277 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||| || || || || || || ||||| || || |||||||| Sbjct 276 TCAAGCGTGATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCAT 230 >seq1348 Length=13918 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || ||||| || |||| || || || ||||||||||||||| |||||| Sbjct 304 CCACCACCACGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCG 245 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || || || || |||| || | ||||||||| || || ||||| ||||| || || | | Sbjct 244 GACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGG 185 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCC 41812 |||| | ||||||||| ||| ||| ||||| | | || || || ||| Sbjct 184 GGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCA 125 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || | ||| || || || || || || ||||| || || |||||||| Sbjct 124 ACATCAAGCGTGATGGTCTTCCCAGTAAGAGTCTTCACAAAGATCTGCAT 75 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462270962600400