Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq25860 140 4e-28 seq3222 116 4e-21 >seq25860 Length=1350 Score = 140 bits (154), Expect = 4e-28 Identities = 385/588 (65%), Gaps = 14/588 (2%) Strand=Plus/Minus Query 24156 CCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 24215 || |||||||| || || | ||| || || || |||||||| ||||| || || | ||| Sbjct 940 CCTTCGTCTCTGCTGATAAGTTCATTCGAGAAGGTGAGTCCAGGCATAAGCCCCCTCTTC 881 Query 24216 TTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTCCTTCTACTGCCGCAAA 24274 || ||||| || || || ||| | | | || |||||||| |||||||||||||||||||| Sbjct 880 TTGAGCCAGAAGATCGA-GCAGAAGCTGCCCGAAAAGAAGATTCCTTCTACTGCCGCAAA 822 Query 24275 GGCAATAAGTCTTTCTCCATAAC------CGGCGCTGTCATGTATCCACTTTTGAGCCCA 24328 || | ||||| ||| | || | ||| |||| ||||| | ||||| Sbjct 821 CGCTACGAGTCTCTCTGCGTAGCTATTGTCGGAGCTG------ATCCAACGCAGGGCCCA 768 Query 24329 ATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttC 24388 || |||||||| || || || || | ||| | || || ||||| ||| ||| || Sbjct 767 GTCAGCCTTCTTCTTCACGACGGGGATGTTGTCTGTGGCTTTGAAGAGGAAGTCTTTCTC 708 Query 24389 ATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTC 24448 || || || | || || || || | || || | || || || |||||||| Sbjct 707 GTTTTGGTCGTTGATGTAGGTGTCGATTAGCAGGGAGTAGGTCTCAGAGTGGATGTTTTC 648 Query 24449 AATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAA 24508 || ||| | || |||||||| || | || || | | ||| | || | || || Sbjct 647 CATCATCATCTAGAAGCCGTAGAAGCACCGCGCTTCAGGCACCTGGATCTCGGTGCAGAA 588 Query 24509 TCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 24568 || || || || ||| || || ||||| || || || || || | || | Sbjct 587 TCTCATAGCCAAGTTCTCAAGAACGATGCCGTCTGATGCGGCGAAGAAGGCTAGCACGTA 528 Query 24569 TTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATAT 24628 || || || | | | |||| || ||| | | |||||| |||| || | || | Sbjct 527 CTTGATGAAGTGTCTCTCGTTGTCGGTGAGTCTCTCCCAATCTTTGAGGTCCTGAGCCAA 468 Query 24629 ATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTC 24688 ||| | |||||| | ||||| || |||| | | ||| ||||| |||||||| || Sbjct 467 ATCGATTTCTTCGGCAGTCCAGAAGCATGCAACCTGATCTTTGTACATCTTCCAGATATC 408 Query 24689 ATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAG 24736 || || | ||| || | || ||||||||||| || |||| | |||| Sbjct 407 ATTGTACTTAATGGGTAGGATGACAAATCTATTAGGGTTTTCTTCAAG 360 >seq3222 Length=1589 Score = 116 bits (128), Expect = 4e-21 Identities = 546/855 (64%), Gaps = 14/855 (2%) Strand=Plus/Minus Query 53705 GCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 53764 ||||| || || || || || || || || |||| ||| | || | || |||||| Sbjct 1564 GCAATGGAGGCGAGGTTGCAGACAGCGACTTCATCGGCAGAGGTGTACTCGATGATCTCA 1505 Query 53765 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 53824 ||||| || || | |||| || || ||||| ||||| | || || || ||||||| Sbjct 1504 GTGCACAGGTTTGAAGACTTAATAGTGCCTAAGTTTTGCTAGTTGCTTTTGCGGTTACAC 1445 Query 53825 GCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTC 53884 ||||| || || || ||| |||| || || ||||| ||||| || || ||| | | Sbjct 1444 GCATCTTTGTAGAGCATGTATGGGGTGCCTGTTTCGATCTGACTCTCAATGATCCATCCC 1385 Query 53885 CAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTG--TAT 53942 |||| | ||| |||||| | ||| | |||| || || ||| ||| || || Sbjct 1384 CAGAGTTACCTAGCTTTTATTGT--CTTTCTGCCTCTCTTATCCTTCTCATACTGCTCAT 1327 Query 53943 ACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACA 54002 ||| ||||||| || ||||| || | | |||||||| |||| || |||| Sbjct 1326 ACAGCTTCTCAAACTACTCACCCCATGAATCATAGAGGCCAGGACACTCATTTGGGCACA 1267 Query 54003 TCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 54062 | | | ||| || || || ||| ||| | ||||| || ||||| || | ||| | || Sbjct 1266 TAAGAGTCCAATCGCCATCGACCTCCACCCTCTTCATGAAAAGATCTGGCACCCACAAAG 1207 Query 54063 CTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 54121 | ||| || | |||||| | | | ||| || || || ||||| || | | ||| Sbjct 1206 C-ATAGAACAAATCTCTCGCACGCTATTCTTCCTTCCCGTGGTTCTTCTTCAACTGAAGG 1148 Query 54122 AACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTT 54180 || | |||| || || | ||||| || || | ||| | || | || | ||| Sbjct 1147 AA-GTCATAGATGTCGGCGTGCCAGGGCTCAAGGTAGACGGCGAAGGAACCCTTTCTTTT 1089 Query 54181 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 54240 | || || || || | |||||| | || | || || |||| |||||| || | | Sbjct 1088 GCCACCACCTTGGTCAACGTATCTTGATGTATCGTTGTAGACTCGCAACATGGGCACTAA 1029 Query 54241 ACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT 54300 || || || ||||| || || ||||| || || || | || | || Sbjct 1028 CCCGTTAGAGTATCCATTTGTTCCACGAATATAACTATCAGACGCTCTGATTCTGTGCAT 969 Query 54301 TGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 54360 | || || || || ||||| || || || | | ||| | || | ||| ||| | Sbjct 968 GGCTATCCCAATACCTCCTGCATGCTTCGAAATGATGGAACATTGCTTCAGCGTCTCAAA 909 Query 54361 GATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAG-ACATTTGGTGAC 54419 ||| || || || ||||||| |||||| || || ||||| | || ||| || || Sbjct 908 GATTCCTTCAATTGAATCATCCTTCATGTCCAGCAGGAAACA-CGAGCTCATCTGAGGAT 850 Query 54420 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTA 54479 ||||| ||||| || | ||||| | ||| || || ||||| | || | | Sbjct 849 TCGGTGTTCCAGCATTGAACAGAGTAGGTGTAGCATGTGTGAACCACCTCTCTCCCATCA 790 Query 54480 GATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCC--TACTGCGACACG 54537 || || || || | ||| | || | ||| | ||| ||||| |||| ||||| Sbjct 789 AATCATATGTTTCAAAAGCAGCCTCCAGATCGTCTAAATGGATTCCAATACT--CACACG 732 Query 54538 CATTAACATGTGCTG 54552 ||||||||||||||| Sbjct 731 CATTAACATGTGCTG 717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593406793964640