Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq39418 91.5 2e-13 seq36835 91.5 2e-13 seq27931 91.5 2e-13 seq25823 91.5 2e-13 seq22711 91.5 2e-13 seq20653 91.5 2e-13 seq16860 91.5 2e-13 seq10818 91.5 2e-13 seq8188 91.5 2e-13 seq4283 91.5 2e-13 >seq39418 Length=937 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| || || ||||| || || ||| | || | || || Sbjct 294 AATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACTTTGGATGTGGAGCCATC 235 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| || | || || ||||||||||| |||||||| || || ||||| Sbjct 234 TGACACGATTGAAAACGTGAAGGCCAAGATTCAAGATAAGGAAGGTATCCCTCCCGATCA 175 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || || ||||| || ||||| || | || || | | || | || || || Sbjct 174 ACAGAGACTGATTTTCGCTGGAAAGCAGCTTGAAGACGGCAGGACCCTCTCTGACTACAA 115 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||||| || ||||| || |||||||||| Sbjct 114 TATTCAGAAGGAATCCACCCTGCATTTGGT 85 >seq36835 Length=903 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| || || ||||| || || ||| | || | || || Sbjct 204 AATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACTTTGGATGTGGAGCCATC 263 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| || | || || ||||||||||| |||||||| || || ||||| Sbjct 264 TGACACGATTGAAAACGTGAAGGCCAAGATTCAAGATAAGGAAGGTATCCCTCCCGATCA 323 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || || ||||| || ||||| || | || || | | || | || || || Sbjct 324 ACAGAGACTGATTTTCGCTGGAAAGCAGCTTGAAGACGGCAGGACCCTCTCTGACTACAA 383 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||||| || ||||| || |||||||||| Sbjct 384 TATTCAGAAGGAATCCACCCTGCATTTGGT 413 >seq27931 Length=569 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| || || ||||| || || ||| | || | || || Sbjct 204 AATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACTTTGGATGTGGAGCCATC 263 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| || | || || ||||||||||| |||||||| || || ||||| Sbjct 264 TGACACGATTGAAAACGTGAAGGCCAAGATTCAAGATAAGGAAGGTATCCCTCCCGATCA 323 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || || ||||| || ||||| || | || || | | || | || || || Sbjct 324 ACAGAGACTGATTTTCGCTGGAAAGCAGCTTGAAGACGGCAGGACCCTCTCTGACTACAA 383 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||||| || ||||| || |||||||||| Sbjct 384 TATTCAGAAGGAATCCACCCTGCATTTGGT 413 >seq25823 Length=903 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| || || ||||| || || ||| | || | || || Sbjct 204 AATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACTTTGGATGTGGAGCCATC 263 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| || | || || ||||||||||| |||||||| || || ||||| Sbjct 264 TGACACGATTGAAAACGTGAAGGCCAAGATTCAAGATAAGGAAGGTATCCCTCCCGATCA 323 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || || ||||| || ||||| || | || || | | || | || || || Sbjct 324 ACAGAGACTGATTTTCGCTGGAAAGCAGCTTGAAGACGGCAGGACCCTCTCTGACTACAA 383 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||||| || ||||| || |||||||||| Sbjct 384 TATTCAGAAGGAATCCACCCTGCATTTGGT 413 >seq22711 Length=903 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| || || ||||| || || ||| | || | || || Sbjct 204 AATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACTTTGGATGTGGAGCCATC 263 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| || | || || ||||||||||| |||||||| || || ||||| Sbjct 264 TGACACGATTGAAAACGTGAAGGCCAAGATTCAAGATAAGGAAGGTATCCCTCCCGATCA 323 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || || ||||| || ||||| || | || || | | || | || || || Sbjct 324 ACAGAGACTGATTTTCGCTGGAAAGCAGCTTGAAGACGGCAGGACCCTCTCTGACTACAA 383 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||||| || ||||| || |||||||||| Sbjct 384 TATTCAGAAGGAATCCACCCTGCATTTGGT 413 >seq20653 Length=689 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| || || ||||| || || ||| | || | || || Sbjct 396 AATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACTTTGGATGTGGAGCCATC 455 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| || | || || ||||||||||| |||||||| || || ||||| Sbjct 456 TGACACGATTGAAAACGTGAAGGCCAAGATTCAAGATAAGGAAGGTATCCCTCCCGATCA 515 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || || ||||| || ||||| || | || || | | || | || || || Sbjct 516 ACAGAGACTGATTTTCGCTGGAAAGCAGCTTGAAGACGGCAGGACCCTCTCTGACTACAA 575 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||||| || ||||| || |||||||||| Sbjct 576 TATTCAGAAGGAATCCACCCTGCATTTGGT 605 >seq16860 Length=798 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| || || ||||| || || ||| | || | || || Sbjct 204 AATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACTTTGGATGTGGAGCCATC 263 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| || | || || ||||||||||| |||||||| || || ||||| Sbjct 264 TGACACGATTGAAAACGTGAAGGCCAAGATTCAAGATAAGGAAGGTATCCCTCCCGATCA 323 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || || ||||| || ||||| || | || || | | || | || || || Sbjct 324 ACAGAGACTGATTTTCGCTGGAAAGCAGCTTGAAGACGGCAGGACCCTCTCTGACTACAA 383 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||||| || ||||| || |||||||||| Sbjct 384 TATTCAGAAGGAATCCACCCTGCATTTGGT 413 >seq10818 Length=497 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| || || ||||| || || ||| | || | || || Sbjct 294 AATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACTTTGGATGTGGAGCCATC 235 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| || | || || ||||||||||| |||||||| || || ||||| Sbjct 234 TGACACGATTGAAAACGTGAAGGCCAAGATTCAAGATAAGGAAGGTATCCCTCCCGATCA 175 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || || ||||| || ||||| || | || || | | || | || || || Sbjct 174 ACAGAGACTGATTTTCGCTGGAAAGCAGCTTGAAGACGGCAGGACCCTCTCTGACTACAA 115 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||||| || ||||| || |||||||||| Sbjct 114 TATTCAGAAGGAATCCACCCTGCATTTGGT 85 >seq8188 Length=937 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| || || ||||| || || ||| | || | || || Sbjct 644 AATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACTTTGGATGTGGAGCCATC 703 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| || | || || ||||||||||| |||||||| || || ||||| Sbjct 704 TGACACGATTGAAAACGTGAAGGCCAAGATTCAAGATAAGGAAGGTATCCCTCCCGATCA 763 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || || ||||| || ||||| || | || || | | || | || || || Sbjct 764 ACAGAGACTGATTTTCGCTGGAAAGCAGCTTGAAGACGGCAGGACCCTCTCTGACTACAA 823 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||||| || ||||| || |||||||||| Sbjct 824 TATTCAGAAGGAATCCACCCTGCATTTGGT 853 >seq4283 Length=919 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| || || ||||| || || ||| | || | || || Sbjct 716 AATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACTTTGGATGTGGAGCCATC 657 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| || | || || ||||||||||| |||||||| || || ||||| Sbjct 656 TGACACGATTGAAAACGTGAAGGCCAAGATTCAAGATAAGGAAGGTATCCCTCCCGATCA 597 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || || ||||| || ||||| || | || || | | || | || || || Sbjct 596 ACAGAGACTGATTTTCGCTGGAAAGCAGCTTGAAGACGGCAGGACCCTCTCTGACTACAA 537 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||||| || ||||| || |||||||||| Sbjct 536 TATTCAGAAGGAATCCACCCTGCATTTGGT 507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755055438342400