Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq39418 96.9 2e-15 seq20653 91.5 1e-13 seq8188 91.5 1e-13 seq25823 87.8 1e-12 seq22711 87.8 1e-12 seq4283 87.8 1e-12 >seq39418 Length=937 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 34172 AGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGG 34231 ||||| ||||| || || | ||| || ||||| |||||||||||||| || | Sbjct 304 AGCCTGAGCACGAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCTT 363 Query 34232 TCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCC 34291 |||| || | |||||||| ||||| ||||| | || |||||| || | || ||| Sbjct 364 CCGTCCTCGAGTTGCTTGCCAGCGAAGATGAGTCTCTATTGGTCGGGAGGGATGCCTTCC 423 Query 34292 TTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTG 34351 ||||| ||||| ||| | || | || | || | | || || || | ||| Sbjct 424 TTGTCCTAGATCTTGGCCTTAACATTCTCAATGGTGTCTGATGGCTCAACATCAAGGGTG 483 Query 34352 ATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| ||||||||||| || ||||| ||||||||||| Sbjct 484 ATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 521 >seq20653 Length=689 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 34172 AGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGG 34231 ||||| ||||| || || | ||| || ||||| |||||||||||||| || | Sbjct 386 AGCCTGAGCACGAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCTT 327 Query 34232 TCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCC 34291 |||| || | |||||||| ||||| ||||| | || |||||| || | || ||| Sbjct 326 CCGTCCTCGAGTTGCTTGCCAGCGAAGATGAGTCTCTATTGGTCGGGAGGGATGCCTTCC 267 Query 34292 TTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTG 34351 ||||| ||||| ||| | || | || | || | | || || || | ||| Sbjct 266 TTGTCCTAGATCTTGGCCTTAACATTCTCAATGGTGTCTGATGGCTCAACATCAAGGGTG 207 Query 34352 ATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| |||||||| || || ||||| ||||||||||| Sbjct 206 ATGGTCTTGCCGGTAAGGGTCTTCACGAAGATCTGCAT 169 >seq8188 Length=937 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 34172 AGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGG 34231 ||||| ||||| || || | ||| || ||||| |||||||||||||| || | Sbjct 634 AGCCTGAGCACGAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCTT 575 Query 34232 TCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCC 34291 |||| || | |||||||| ||||| ||||| | || |||||| || | || ||| Sbjct 574 CCGTCCTCGAGTTGCTTGCCAGCGAAGATGAGTCTCTATTGGTCGGGAGGGATGCCTTCC 515 Query 34292 TTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTG 34351 ||||| ||||| ||| | || | || | || | | || || || | ||| Sbjct 514 TTGTCCTAGATCTTGGCCTTAACATTCTCAATGGTGTCTGATGGCTCAACATCAAGGGTG 455 Query 34352 ATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| |||||||| || || ||||| ||||||||||| Sbjct 454 ATGGTCTTGCCGGTAAGGGTCTTCACGAAGATCTGCAT 417 >seq25823 Length=903 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | |||||||||||||| || | || ||| || || ||||||||||| || Sbjct 660 TCCACCTCTCAGCCTCAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGA 601 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || | | |||| || | |||||| ||||| || ||||| | ||| || ||| ||| Sbjct 600 CAAGGTCCTGCCGTCTTCAAGCTGCTTTCCTGCAAAGATGAGTCTCTGTTGATCGGGGGG 541 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| |||||| ||| | | | || | |||| | || || Sbjct 540 AATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCAAC 481 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || || || || || || || ||||| ||||| Sbjct 480 ATCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 433 >seq22711 Length=903 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | |||||||||||||| || | || ||| || || ||||||||||| || Sbjct 660 TCCACCTCTCAGCCTCAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGA 601 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || | | |||| || | |||||| ||||| || ||||| | ||| || ||| ||| Sbjct 600 CAAGGTCCTGCCGTCTTCAAGCTGCTTTCCTGCAAAGATGAGTCTCTGTTGATCGGGGGG 541 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| |||||| ||| | | | || | |||| | || || Sbjct 540 AATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATAGTGTCGGAAGGCTCAAC 481 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || || || || || || || ||||| ||||| Sbjct 480 ATCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 433 >seq4283 Length=919 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | |||||||||||||| || | || ||| || || ||||||||||| || Sbjct 260 TCCACCTCTCAGCCTCAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGA 319 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || | | |||| || | |||||| ||||| || ||||| | ||| || ||| ||| Sbjct 320 CAAGGTCCTGCCGTCTTCAAGCTGCTTTCCTGCAAAGATGAGTCTCTGTTGATCGGGGGG 379 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| |||||| ||| | | | || | |||| | || || Sbjct 380 AATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCAAC 439 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || || || || || || || ||||| ||||| Sbjct 440 ATCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322904981670080