Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq39418 104 2e-17 seq39092 104 2e-17 seq8188 104 2e-17 seq20653 89.7 4e-13 seq25823 86.0 5e-12 seq22711 86.0 5e-12 seq4283 86.0 5e-12 seq36835 84.2 2e-11 seq16860 84.2 2e-11 >seq39418 Length=937 Score = 104 bits (114), Expect = 2e-17 Identities = 163/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| ||| || || | || || ||| ||||||||| ||||| |||||| Sbjct 523 CCACCTCTCAGTCTCAAGACGAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGAG 582 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | |||| |||| | ||| |||||||| || | | |||||| ||||| || Sbjct 583 AGGGTTCTGCCGTCTTCCAACTATTTGCCGGCGAAGATGAGTCTCTGTTGATCGGGTGGG 642 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || |||||| || || ||| || | | | | |||| ||| || Sbjct 643 ATTCCTTCTTTGTCCTGGATCTTAGCCTTCACGTTCTCGATGGTGTCTGATGGCTCGACG 702 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCA-TGTTG 45340 |||| ||| || ||||| || || |||||||||||||||||||||| ||||| Sbjct 703 TCCAAGGTGATAGTCTTTCCTGTGAGAGTCTTCACAAAGATTTGCATTGTTG 754 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||||||| || | |||| || ||||| || || ||||| Sbjct 330 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCTTCCGTCCTCGAGTTGCTTGCCAGCGAA 389 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | | || |||||||||||| | || ||||||||| || || |||||| Sbjct 390 GATGAGTCTCTATTGGTCGGGAGGGATGCCTTCCTTGTCCTAGATCTTGGCCTTAACATT 449 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| ||| || || | ||| || |||||||| || || |||||||| Sbjct 450 CTCAATGGTGTCTGATGGCTCAACATCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCAC 509 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 510 GAAGATCTGCAT 521 >seq39092 Length=483 Score = 104 bits (114), Expect = 2e-17 Identities = 163/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| ||| || || | || || ||| ||||||||| ||||| |||||| Sbjct 69 CCACCTCTCAGTCTCAAGACGAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGAG 128 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | |||| |||| | ||| |||||||| || | | |||||| ||||| || Sbjct 129 AGGGTTCTGCCGTCTTCCAACTATTTGCCGGCGAAGATGAGTCTCTGTTGATCGGGTGGG 188 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || |||||| || || ||| || | | | | |||| ||| || Sbjct 189 ATTCCTTCTTTGTCCTGGATCTTAGCCTTCACGTTCTCGATGGTGTCTGATGGCTCGACG 248 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCA-TGTTG 45340 |||| ||| || ||||| || || |||||||||||||||||||||| ||||| Sbjct 249 TCCAAGGTGATAGTCTTTCCTGTGAGAGTCTTCACAAAGATTTGCATTGTTG 300 >seq8188 Length=937 Score = 104 bits (114), Expect = 2e-17 Identities = 163/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| ||| || || | || || ||| ||||||||| ||||| |||||| Sbjct 415 CCACCTCTCAGTCTCAAGACGAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGAA 356 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | |||| |||| | ||| |||||||| || | | |||||| ||||| || Sbjct 355 AGGGTTCTGCCGTCTTCCAACTATTTGCCGGCGAAGATGAGTCTCTGTTGATCGGGTGGG 296 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || |||||| || || ||| || | | | | |||| ||| || Sbjct 295 ATTCCTTCTTTGTCCTGGATCTTAGCCTTCACGTTCTCGATGGTGTCAGATGGCTCGACG 236 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCA-TGTTG 45340 |||| ||| || ||||| || || |||||||||||||||||||||| ||||| Sbjct 235 TCCAAGGTGATAGTCTTTCCTGTGAGAGTCTTCACAAAGATTTGCATTGTTG 184 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||||||| || | |||| || ||||| || || ||||| Sbjct 608 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCTTCCGTCCTCGAGTTGCTTGCCAGCGAA 549 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | | || |||||||||||| | || ||||||||| || || |||||| Sbjct 548 GATGAGTCTCTATTGGTCGGGAGGGATGCCTTCCTTGTCCTAGATCTTGGCCTTAACATT 489 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| ||| || || | ||| || |||||||| || || |||||||| Sbjct 488 CTCAATGGTGTCTGATGGCTCAACATCAAGGGTGATGGTCTTGCCGGTAAGGGTCTTCAC 429 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 428 GAAGATCTGCAT 417 >seq20653 Length=689 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||||||| || | |||| || ||||| || || ||||| Sbjct 360 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCTTCCGTCCTCGAGTTGCTTGCCAGCGAA 301 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | | || |||||||||||| | || ||||||||| || || |||||| Sbjct 300 GATGAGTCTCTATTGGTCGGGAGGGATGCCTTCCTTGTCCTAGATCTTGGCCTTAACATT 241 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| ||| || || | ||| || |||||||| || || |||||||| Sbjct 240 CTCAATGGTGTCTGATGGCTCAACATCAAGGGTGATGGTCTTGCCGGTAAGGGTCTTCAC 181 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 180 GAAGATCTGCAT 169 >seq25823 Length=903 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| || | ||||| || || || ||||| || ||||||||||| | Sbjct 659 CCACCTCTCAGCCTCAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAC 600 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | | |||| || || || ||||| || || || | | |||||| ||||| || Sbjct 599 AAGGTCCTGCCGTCTTCAAGCTGCTTTCCTGCAAAGATGAGTCTCTGTTGATCGGGGGGA 540 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||||||| || ||| ||| || | | | |||| | ||| || Sbjct 539 ATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCAACA 480 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || ||||| || ||||| ||||| || ||||||||||| Sbjct 479 TCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 433 >seq22711 Length=903 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| || | ||||| || || || ||||| || ||||||||||| | Sbjct 659 CCACCTCTCAGCCTCAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAC 600 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | | |||| || || || ||||| || || || | | |||||| ||||| || Sbjct 599 AAGGTCCTGCCGTCTTCAAGCTGCTTTCCTGCAAAGATGAGTCTCTGTTGATCGGGGGGA 540 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||||||| || ||| ||| || | | | |||| | ||| || Sbjct 539 ATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATAGTGTCGGAAGGCTCAACA 480 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || ||||| || ||||| ||||| || ||||||||||| Sbjct 479 TCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 433 >seq4283 Length=919 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| || | ||||| || || || ||||| || ||||||||||| | Sbjct 261 CCACCTCTCAGCCTCAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAC 320 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | | |||| || || || ||||| || || || | | |||||| ||||| || Sbjct 321 AAGGTCCTGCCGTCTTCAAGCTGCTTTCCTGCAAAGATGAGTCTCTGTTGATCGGGGGGA 380 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||||||| || ||| ||| || | | | |||| | ||| || Sbjct 381 ATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCAACA 440 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || ||||| || ||||| ||||| || ||||||||||| Sbjct 441 TCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 487 >seq36835 Length=903 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| || | ||||| || || || ||||| || ||||||||||| | Sbjct 659 CCACCTCTCAGCCTCAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAC 600 Query 45170 A--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 | ||| | | || || || || ||||| || || || | | |||||| ||||| | Sbjct 599 AAGGTT--CTGCCATCCTCAAGCTGCTTTCCAGCAAAGATGAGTCTCTGTTGATCGGGGG 542 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | ||||||||||||| || ||| ||| || | | | |||| | ||| | Sbjct 541 GAATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATAGTGTCGGAAGGCTCAA 482 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | || | || || ||||| || ||||| ||||| || ||||||||||| Sbjct 481 CATCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 433 >seq16860 Length=798 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| || | ||||| || || || ||||| || ||||||||||| | Sbjct 659 CCACCTCTCAGCCTCAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAC 600 Query 45170 A--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 | ||| | | || || || || ||||| || || || | | |||||| ||||| | Sbjct 599 AAGGTT--CTGCCATCCTCAAGCTGCTTTCCAGCAAAGATGAGTCTCTGTTGATCGGGGG 542 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | ||||||||||||| || ||| ||| || | | | |||| | ||| | Sbjct 541 GAATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATAGTGTCGGAAGGCTCAA 482 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | || | || || ||||| || ||||| ||||| || ||||||||||| Sbjct 481 CATCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394870958220778