Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq36835 87.8 1e-12 seq16860 87.8 1e-12 seq25823 84.2 2e-11 seq22711 84.2 2e-11 seq4283 84.2 2e-11 >seq36835 Length=903 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 18095 TTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTC 18154 || ||| || | || || || |||| || || |||||||| ||||| ||||||||||| Sbjct 663 TTGTCCACCTCTCAGCCTCAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTC 604 Query 18155 GGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCAC 18214 | || ||| | | ||| || | || || || ||| |||| ||||| |||||||| Sbjct 603 AGACAAGGTTCTGCCATCCTCAAGCTGCTTTCCAGCAAAGATGAGTCTCTGTTGATCGGG 544 Query 18215 GGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTC 18274 ||| | || ||||| || || | | |||||| | ||| |||||| ||||| Sbjct 543 GGGAATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATAGTGTCGGAAGGCTC 484 Query 18275 GGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | || || |||| || || || || |||||||| Sbjct 483 AACATCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 433 >seq16860 Length=798 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 18095 TTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTC 18154 || ||| || | || || || |||| || || |||||||| ||||| ||||||||||| Sbjct 663 TTGTCCACCTCTCAGCCTCAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTC 604 Query 18155 GGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCAC 18214 | || ||| | | ||| || | || || || ||| |||| ||||| |||||||| Sbjct 603 AGACAAGGTTCTGCCATCCTCAAGCTGCTTTCCAGCAAAGATGAGTCTCTGTTGATCGGG 544 Query 18215 GGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTC 18274 ||| | || ||||| || || | | |||||| | ||| |||||| ||||| Sbjct 543 GGGAATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATAGTGTCGGAAGGCTC 484 Query 18275 GGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | || || |||| || || || || |||||||| Sbjct 483 AACATCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 433 >seq25823 Length=903 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 18095 TTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTC 18154 || ||| || | || || || |||| || || |||||||| ||||| ||||||||||| Sbjct 663 TTGTCCACCTCTCAGCCTCAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTC 604 Query 18155 GGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCAC 18214 | || || | | ||||| | || || || ||| |||| ||||| |||||||| Sbjct 603 AGACAAGGTCCTGCCGTCTTCAAGCTGCTTTCCTGCAAAGATGAGTCTCTGTTGATCGGG 544 Query 18215 GGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTC 18274 ||| | || ||||| || || | | |||||| | | ||| ||||| ||||| Sbjct 543 GGGAATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTTTCAATGGTGTCGGAAGGCTC 484 Query 18275 GGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | || || |||| || || || || |||||||| Sbjct 483 AACATCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 433 >seq22711 Length=903 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 18095 TTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTC 18154 || ||| || | || || || |||| || || |||||||| ||||| ||||||||||| Sbjct 663 TTGTCCACCTCTCAGCCTCAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTC 604 Query 18155 GGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCAC 18214 | || || | | ||||| | || || || ||| |||| ||||| |||||||| Sbjct 603 AGACAAGGTCCTGCCGTCTTCAAGCTGCTTTCCTGCAAAGATGAGTCTCTGTTGATCGGG 544 Query 18215 GGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTC 18274 ||| | || ||||| || || | | |||||| | ||| |||||| ||||| Sbjct 543 GGGAATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATAGTGTCGGAAGGCTC 484 Query 18275 GGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | || || |||| || || || || |||||||| Sbjct 483 AACATCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 433 >seq4283 Length=919 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 18095 TTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTC 18154 || ||| || | || || || |||| || || |||||||| ||||| ||||||||||| Sbjct 257 TTGTCCACCTCTCAGCCTCAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTC 316 Query 18155 GGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCAC 18214 | || || | | ||||| | || || || ||| |||| ||||| |||||||| Sbjct 317 AGACAAGGTCCTGCCGTCTTCAAGCTGCTTTCCTGCAAAGATGAGTCTCTGTTGATCGGG 376 Query 18215 GGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTC 18274 ||| | || ||||| || || | | |||||| | | ||| ||||| ||||| Sbjct 377 GGGAATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTTTCAATGGTGTCGGAAGGCTC 436 Query 18275 GGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | || || |||| || || || || |||||||| Sbjct 437 AACATCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379147890769410