Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq25860 152 6e-32 seq3222 122 1e-22 >seq25860 Length=1350 Score = 152 bits (168), Expect = 6e-32 Identities = 395/603 (66%), Gaps = 12/603 (2%) Strand=Plus/Minus Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655 ||||| || |||||||| || || | ||| || || || |||||||| ||||| || || Sbjct 947 GTGCATGCCTTCGTCTCTGCTGATAAGTTCATTCGAGAAGGTGAGTCCAGGCATAAGCCC 888 Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715 | ||| || ||||| || || || ||| || ||||||||||||||||||||||| Sbjct 887 CCTCTTCTTGAGCCAGAAGATCGAGCAGAAGCTGCCCGAAAAGAAGATTCCTTCTACTGC 828 Query 33716 AGCAAAGGCAATAAGTCTCTCTCCATAAC------CGGCGCTGTCATGTATCCACTTTTG 33769 ||||| || | ||||||||| | || | ||| |||| ||||| | Sbjct 827 CGCAAACGCTACGAGTCTCTCTGCGTAGCTATTGTCGGAGCTG------ATCCAACGCAG 774 Query 33770 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 33829 ||||| || |||||||| || || || || | ||| |||| || ||||| ||| Sbjct 773 GGCCCAGTCAGCCTTCTTCTTCACGACGGGGATGTTGTCTGTGGCTTTGAAGAGGAAGTC 714 Query 33830 tttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAAT 33889 ||| || || || || | || || ||||| | || || | || || || || Sbjct 713 TTTCTCGTTTTGGTCGTTGATGTAGGTGTCGATTAGCAGGGAGTAGGTCTCAGAGTGGAT 654 Query 33890 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGT 33949 |||||| || ||||| || |||||||| || | || || | | ||| | || || Sbjct 653 GTTTTCCATCATCATCTAGAAGCCGTAGAAGCACCGCGCTTCAGGCACCTGGATCTCGGT 594 Query 33950 ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAA 34009 || |||| || || || ||| || || || || || || || || || | Sbjct 593 GCAGAATCTCATAGCCAAGTTCTCAAGAACGATGCCGTCTGATGCGGCGAAGAAGGCTAG 534 Query 34010 TACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTT 34069 || | || || || | | | |||| || ||| | | |||||| |||| || | Sbjct 533 CACGTACTTGATGAAGTGTCTCTCGTTGTCGGTGAGTCTCTCCCAATCTTTGAGGTCCTG 474 Query 34070 AGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCA 34129 || | ||| | |||||| | ||||| || |||| | | ||| ||||| ||||| Sbjct 473 AGCCAAATCGATTTCTTCGGCAGTCCAGAAGCATGCAACCTGATCTTTGTACATCTTCCA 414 Query 34130 GATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAGGATAGG 34189 ||| |||| || | || || | || ||||||||||| || ||| | |||| | ||| Sbjct 413 GATATCATTGTACTTAATGGGTAGGATGACAAATCTATTAGGGTTTTCTTCAAGAAGAGG 354 Query 34190 TTC 34192 || Sbjct 353 CTC 351 >seq3222 Length=1589 Score = 122 bits (134), Expect = 1e-22 Identities = 547/854 (64%), Gaps = 12/854 (1%) Strand=Plus/Minus Query 62943 GCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 63002 |||| || || || || || || || || |||| ||| | || | || |||||| Sbjct 1564 GCAATGGAGGCGAGGTTGCAGACAGCGACTTCATCGGCAGAGGTGTACTCGATGATCTCA 1505 Query 63003 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63062 ||||| || || | |||| ||||| ||||| ||||| | || || || ||||||| Sbjct 1504 GTGCACAGGTTTGAAGACTTAATAGTGCCTAAGTTTTGCTAGTTGCTTTTGCGGTTACAC 1445 Query 63063 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63122 ||||| || || || ||| |||| || || ||||| |||||| || || ||| | | Sbjct 1444 GCATCTTTGTAGAGCATGTATGGGGTGCCTGTTTCGATCTGACTCTCAATGATCCATCCC 1385 Query 63123 CAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATAC 63182 |||| | ||| |||||| | | || |||| | || | || || | |||| Sbjct 1384 CAGAGTTACCTAGCTTTTATTGTCTTTCTGCCTCTCTTATCCTTCTCATACTGCTCATAC 1325 Query 63183 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATC 63242 | || |||| || ||||| || | | | |||||| |||| || ||||| Sbjct 1324 AGCTTCTCAAACTACTCACCCCATGAATCATAGAGGCCAGGACACTCATTTGGGCACATA 1265 Query 63243 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63302 | | ||| || || || ||| ||| | ||||| || ||||| || | ||| | ||| Sbjct 1264 AGAGTCCAATCGCCATCGACCTCCACCCTCTTCATGAAAAGATCTGGCACCCACAAAGC- 1206 Query 63303 ATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63361 ||| || | |||||| | | | ||| || || || ||||| || | | ||||| Sbjct 1205 ATAGAACAAATCTCTCGCACGCTATTCTTCCTTCCCGTGGTTCTTCTTCAACTGAAGGAA 1146 Query 63362 CGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGT 63420 | |||| || || | ||||| || || | ||| | ||| | || | |||| Sbjct 1145 -GTCATAGATGTCGGCGTGCCAGGGCTCAAGGTAGACGGCGAAGGAACCCTTTCTTTTGC 1087 Query 63421 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 63480 || || || || | |||||| | || | || || |||| |||||| || | | | Sbjct 1086 CACCACCTTGGTCAACGTATCTTGATGTATCGTTGTAGACTCGCAACATGGGCACTAACC 1027 Query 63481 CGTTTGA-TATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATT 63539 |||| || ||| ||||| || || ||||| | || || | || | || Sbjct 1026 CGTTAGAGTAT-CCATTTGTTCCACGAATATAACTATCAGACGCTCTGATTCTGTGCATG 968 Query 63540 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAG 63599 | || || || || ||||| || || || | | ||| | || | ||| ||| || Sbjct 967 GCTATCCCAATACCTCCTGCATGCTTCGAAATGATGGAACATTGCTTCAGCGTCTCAAAG 908 Query 63600 ATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAG-ACATTTGGTGACG 63658 || ||||| || |||||| |||||| || || ||||| | || ||| || || Sbjct 907 ATTCCTTCAATTGAATCATCCTTCATGTCCAGCAGGAAACA-CGAGCTCATCTGAGGATT 849 Query 63659 AGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63718 | ||||| ||||| || | ||||| | ||| || || ||||| | || | | Sbjct 848 CGGTGTTCCAGCATTGAACAGAGTAGGTGTAGCATGTGTGAACCACCTCTCTCCCATCAA 789 Query 63719 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC--TACTGCGACACGC 63776 || || || |||| ||| | || | ||| | ||| ||||| |||| |||||| Sbjct 788 ATCATATGTTTCAAAAGCAGCCTCCAGATCGTCTAAATGGATTCCAATACT--CACACGC 731 Query 63777 ATTAACATGTGCTG 63790 |||||||||||||| Sbjct 730 ATTAACATGTGCTG 717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629483654963040