Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq25860 147 3e-30 seq3222 125 9e-24 >seq25860 Length=1350 Score = 147 bits (162), Expect = 3e-30 Identities = 387/585 (66%), Gaps = 8/585 (1%) Strand=Plus/Minus Query 36179 CCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 36238 || |||||||| || || | ||| || || || |||||||| ||||| || || | ||| Sbjct 940 CCTTCGTCTCTGCTGATAAGTTCATTCGAGAAGGTGAGTCCAGGCATAAGCCCCCTCTTC 881 Query 36239 TTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTCCTTCTACTGCCGCAAA 36297 || ||||| || || || ||| | | | || |||||||| |||||||||||||||||||| Sbjct 880 TTGAGCCAGAAGATCGA-GCAGAAGCTGCCCGAAAAGAAGATTCCTTCTACTGCCGCAAA 822 Query 36298 GGCAATAAGTCTCTCTCCATAACCGGCACTGTC--ATGT-ATCCACTTTTGAGCCCAATC 36354 || | ||||||||| | || | | |||| | | ||||| | ||||| || Sbjct 821 CGCTACGAGTCTCTCTGCGTA---GCTATTGTCGGAGCTGATCCAACGCAGGGCCCAGTC 765 Query 36355 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATT 36414 |||||||| || || || || | ||| | || || ||||| ||| ||| || || Sbjct 764 AGCCTTCTTCTTCACGACGGGGATGTTGTCTGTGGCTTTGAAGAGGAAGTCTTTCTCGTT 705 Query 36415 ACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 36474 || || | || || || || | || || | || || || |||||||| || Sbjct 704 TTGGTCGTTGATGTAGGTGTCGATTAGCAGGGAGTAGGTCTCAGAGTGGATGTTTTCCAT 645 Query 36475 GGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCG 36534 ||| | || |||||||| || | || || | | ||| | || || || |||| Sbjct 644 CATCATCTAGAAGCCGTAGAAGCACCGCGCTTCAGGCACCTGGATCTCGGTGCAGAATCT 585 Query 36535 TTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTT 36594 || || || ||| || || ||||| || || || || || | || | || Sbjct 584 CATAGCCAAGTTCTCAAGAACGATGCCGTCTGATGCGGCGAAGAAGGCTAGCACGTACTT 525 Query 36595 TATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATC 36654 || || | | | ||||| || ||| | | |||||| |||| || | || | ||| Sbjct 524 GATGAAGTGTCTCTCGTTGTCGGTGAGTCTCTCCCAATCTTTGAGGTCCTGAGCCAAATC 465 Query 36655 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 36714 | |||||| | ||||| || |||| | | ||| ||||| |||||||| |||| Sbjct 464 GATTTCTTCGGCAGTCCAGAAGCATGCAACCTGATCTTTGTACATCTTCCAGATATCATT 405 Query 36715 ATATTGAATTGGAAAAATAACAAATCTATTTTGATTTTTTGCAAG 36759 || | ||| || | || ||||||||||| | |||| | |||| Sbjct 404 GTACTTAATGGGTAGGATGACAAATCTATTAGGGTTTTCTTCAAG 360 >seq3222 Length=1589 Score = 125 bits (138), Expect = 9e-24 Identities = 550/856 (64%), Gaps = 16/856 (2%) Strand=Plus/Minus Query 65736 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 65795 |||| || || || || || || || || |||| ||| | || | || |||||| Sbjct 1564 GCAATGGAGGCGAGGTTGCAGACAGCGACTTCATCGGCAGAGGTGTACTCGATGATCTCA 1505 Query 65796 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 65855 ||||| || || | |||| || || ||||| ||||| | || || || ||||||| Sbjct 1504 GTGCACAGGTTTGAAGACTTAATAGTGCCTAAGTTTTGCTAGTTGCTTTTGCGGTTACAC 1445 Query 65856 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 65915 ||||| || || || ||| |||| || || ||||| |||||| || || ||| | | Sbjct 1444 GCATCTTTGTAGAGCATGTATGGGGTGCCTGTTTCGATCTGACTCTCAATGATCCATCCC 1385 Query 65916 CAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTG--TAT 65973 |||| | ||| |||||| | ||| | |||| || || ||| ||| || || Sbjct 1384 CAGAGTTACCTAGCTTTTATTGT--CTTTCTGCCTCTCTTATCCTTCTCATACTGCTCAT 1327 Query 65974 ACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACA 66033 ||| || |||| || ||||| || | | |||||||| |||| || |||| Sbjct 1326 ACAGCTTCTCAAACTACTCACCCCATGAATCATAGAGGCCAGGACACTCATTTGGGCACA 1267 Query 66034 TCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 66093 | | | ||| || || || ||| ||| | ||||| || ||||| || | ||| | || Sbjct 1266 TAAGAGTCCAATCGCCATCGACCTCCACCCTCTTCATGAAAAGATCTGGCACCCACAAAG 1207 Query 66094 CTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 66152 | ||| || |||||||| | | | ||| || || || ||||| || | | ||| Sbjct 1206 C-ATAGAACAAATCTCTCGCACGCTATTCTTCCTTCCCGTGGTTCTTCTTCAACTGAAGG 1148 Query 66153 AACGCCATA-ATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 66211 || | |||| || || ||||| || || | ||| | ||| | || | ||| Sbjct 1147 AA-GTCATAGATGTCGGCGTGCCAGGGCTCAAGGTAGACGGCGAAGGAACCCTTTCTTTT 1089 Query 66212 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 66271 | || || || || | |||||| | || | || || |||| |||||| || | | Sbjct 1088 GCCACCACCTTGGTCAACGTATCTTGATGTATCGTTGTAGACTCGCAACATGGGCACTAA 1029 Query 66272 ACCATTGGATGTA-CCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAA 66330 || || || ||| ||||| || || ||||| || || || | || | | Sbjct 1028 CCCGTTAGA-GTATCCATTTGTTCCACGAATATAACTATCAGACGCTCTGATTCTGTGCA 970 Query 66331 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCAT 66390 | | || || || || ||||| || || || | | ||| | || | ||| ||| Sbjct 969 TGGCTATCCCAATACCTCCTGCATGCTTCGAAATGATGGAACATTGCTTCAGCGTCTCAA 910 Query 66391 AGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAG-ACATTTGGTGA 66449 |||| || || || ||||||| |||||| || || ||||| | || ||| || || Sbjct 909 AGATTCCTTCAATTGAATCATCCTTCATGTCCAGCAGGAAACA-CGAGCTCATCTGAGGA 851 Query 66450 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGT 66509 ||||| ||||| || | ||||| | ||| || || ||||| | || | Sbjct 850 TTCGGTGTTCCAGCATTGAACAGAGTAGGTGTAGCATGTGTGAACCACCTCTCTCCCATC 791 Query 66510 AGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC--TACTGCGACAC 66567 | || || || |||| ||| | || | ||| | ||| ||||| |||| |||| Sbjct 790 AAATCATATGTTTCAAAAGCAGCCTCCAGATCGTCTAAATGGATTCCAATACT--CACAC 733 Query 66568 GCATTAACATGTGCTG 66583 |||||||||||||||| Sbjct 732 GCATTAACATGTGCTG 717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657823820327120