Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq25860 179 5e-40 seq3222 118 2e-21 >seq25860 Length=1350 Score = 179 bits (198), Expect = 5e-40 Identities = 398/595 (67%), Gaps = 14/595 (2%) Strand=Plus/Minus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 ||||| || |||||||| || || ||||| || || || |||||||| ||||| || || Sbjct 947 GTGCATGCCTTCGTCTCTGCTGATAAGTTCATTCGAGAAGGTGAGTCCAGGCATAAGCCC 888 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAAGATTCCTTCTACTG 50092 | ||| || ||||| || || || ||| | | || |||||||||||||||||||||| Sbjct 887 CCTCTTCTTGAGCCAGAAGATCGA-GCAGAAGCTGCCCGAAAAGAAGATTCCTTCTACTG 829 Query 50093 CGGCAAAGGCAACAAGTCTCTCTCCATAACT------GGCGCTGTCATGTATCCACTTTT 50146 | ||||| || || ||||||||| | || || || |||| ||||| Sbjct 828 CCGCAAACGCTACGAGTCTCTCTGCGTAGCTATTGTCGGAGCTG------ATCCAACGCA 775 Query 50147 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 50206 | ||||| || |||||||| || || || || | ||| |||| || ||||| ||| Sbjct 774 GGGCCCAGTCAGCCTTCTTCTTCACGACGGGGATGTTGTCTGTGGCTTTGAAGAGGAAGT 715 Query 50207 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAA 50266 ||| || || || || | || || ||||| | || || | || || || | Sbjct 714 CTTTCTCGTTTTGGTCGTTGATGTAGGTGTCGATTAGCAGGGAGTAGGTCTCAGAGTGGA 655 Query 50267 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTG 50326 ||||||| || ||||| || |||||||| || | || || | | ||| | || | Sbjct 654 TGTTTTCCATCATCATCTAGAAGCCGTAGAAGCACCGCGCTTCAGGCACCTGGATCTCGG 595 Query 50327 TACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 50386 | || |||| ||| || || ||| || || ||||| || || || || || | Sbjct 594 TGCAGAATCTCATAGCCAAGTTCTCAAGAACGATGCCGTCTGATGCGGCGAAGAAGGCTA 535 Query 50387 ATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTT 50446 || | || || || ||| | |||||| || ||| | | |||||| |||| || | Sbjct 534 GCACGTACTTGATGAAGTGTCTCTCGTTGTCGGTGAGTCTCTCCCAATCTTTGAGGTCCT 475 Query 50447 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 50506 || | ||| | |||||| | ||||| || |||| | | ||| ||||| |||| Sbjct 474 GAGCCAAATCGATTTCTTCGGCAGTCCAGAAGCATGCAACCTGATCTTTGTACATCTTCC 415 Query 50507 AGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAG 50561 |||| |||| || | || || | || ||||||||||| || ||| | |||| Sbjct 414 AGATATCATTGTACTTAATGGGTAGGATGACAAATCTATTAGGGTTTTCTTCAAG 360 >seq3222 Length=1589 Score = 118 bits (130), Expect = 2e-21 Identities = 513/801 (64%), Gaps = 8/801 (1%) Strand=Plus/Minus Query 79666 ATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTT 79725 || || |||||||| ||||| | ||||||| || ||||| ||||| | || || || Sbjct 1513 ATGATCTCAGTGCACAGGTTTGAAGACTTAATAGTGCCTAAGTTTTGCTAGTTGCTTTTG 1454 Query 79726 TTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATA 79785 |||||||||||| || || || ||| | || || || ||||| |||||| || || Sbjct 1453 CGGTTACACGCATCTTTGTAGAGCATGTATGGGGTGCCTGTTTCGATCTGACTCTCAATG 1394 Query 79786 ATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTAT 79845 ||| | ||||| | ||| |||||| | || |||||| || | || || Sbjct 1393 ATCCATCCCCAGAGTTACCTAGCTTTTATTGTCTTTCTGCCTCTCTTATCCTTCTCATAC 1334 Query 79846 TGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCA 79905 || ||| | || |||| || ||||| ||| | | |||||||| || | Sbjct 1333 TGCTCATACAGCTTCTCAAACTACTCACCCCATGAATCATAGAGGCCAGGACACTCATTT 1274 Query 79906 GGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATC 79965 || ||||| | | ||| || ||||| ||| || | ||||| || ||||| || | | Sbjct 1273 GGGCACATAAGAGTCCAATCGCCATCGACCTCCACCCTCTTCATGAAAAGATCTGGCACC 1214 Query 79966 CAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAG 80024 || | ||| ||| || | |||||| | | | || || || || ||||| || | Sbjct 1213 CACAAAGC-ATAGAACAAATCTCTCGCACGCTATTCTTCCTTCCCGTGGTTCTTCTTCAA 1155 Query 80025 ATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCG 80083 | ||||| | |||| || || | ||||| || || | ||| | ||| | ||| Sbjct 1154 CTGAAGGAA-GTCATAGATGTCGGCGTGCCAGGGCTCAAGGTAGACGGCGAAGGAACCCT 1096 Query 80084 GTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 80143 || |||| || || || || | |||||| | || | || || |||| |||||| | Sbjct 1095 TTCTTTTGCCACCACCTTGGTCAACGTATCTTGATGTATCGTTGTAGACTCGCAACATGG 1036 Query 80144 GAATAATACCATTGGATGTA-CCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA 80202 | | | || || || ||| ||||| || || ||||| || || || | || Sbjct 1035 GCACTAACCCGTTAGA-GTATCCATTTGTTCCACGAATATAACTATCAGACGCTCTGATT 977 Query 80203 TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 80262 | || | || || || || ||||| || || || | | ||| | || | | Sbjct 976 CTGTGCATGGCTATCCCAATACCTCCTGCATGCTTCGAAATGATGGAACATTGCTTCAGC 917 Query 80263 GTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAG-ACAT 80321 || ||| |||| || || || |||||| |||||| || || ||||| | || ||| Sbjct 916 GTCTCAAAGATTCCTTCAATTGAATCATCCTTCATGTCCAGCAGGAAACA-CGAGCTCAT 858 Query 80322 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 80381 || || ||||| ||||| || | ||||| | ||| || || ||||| | || Sbjct 857 CTGAGGATTCGGTGTTCCAGCATTGAACAGAGTAGGTGTAGCATGTGTGAACCACCTCTC 798 Query 80382 AGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGC 80441 || | || || || |||| ||| | || | ||| | ||| ||||| | Sbjct 797 TCCCATCAAATCATATGTTTCAAAAGCAGCCTCCAGATCGTCTAAATGGATTCCAATACT 738 Query 80442 GACACGCATTAACATGTGCTG 80462 |||||||||||||||||||| Sbjct 737 CACACGCATTAACATGTGCTG 717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717887955925520