Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq39418 105 5e-18 seq39092 105 5e-18 seq8188 105 5e-18 seq34605 87.8 1e-12 seq26910 87.8 1e-12 seq15309 87.8 1e-12 seq5479 87.8 1e-12 seq1537 87.8 1e-12 seq25823 86.0 5e-12 seq22711 86.0 5e-12 seq4283 86.0 5e-12 >seq39418 Length=937 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | |||||| || || | ||||| ||| |||||| || | || || ||||| Sbjct 523 CCACCTCTCAGTCTCAAGACGAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGAG 582 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | |||| ||||| | ||||||||| || || | || ||||||||||| || Sbjct 583 AGGGTTCTGCCGTCTTCCAACTATTTGCCGGCGAAGATGAGTCTCTGTTGATCGGGTGGG 642 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| | || || | | | ||||| | ||||||| Sbjct 643 ATTCCTTCTTTGTCCTGGATCTTAGCCTTCACGTTCTCGATGGTGTCTGATGGCTCGACG 702 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || ||||| ||||| || ||||| |||||||| ||||||||| Sbjct 703 TCCAAGGTGATAGTCTTTCCTGTGAGAGTCTTCACAAAGATTTGCATT 750 >seq39092 Length=483 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | |||||| || || | ||||| ||| |||||| || | || || ||||| Sbjct 69 CCACCTCTCAGTCTCAAGACGAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGAG 128 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | |||| ||||| | ||||||||| || || | || ||||||||||| || Sbjct 129 AGGGTTCTGCCGTCTTCCAACTATTTGCCGGCGAAGATGAGTCTCTGTTGATCGGGTGGG 188 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| | || || | | | ||||| | ||||||| Sbjct 189 ATTCCTTCTTTGTCCTGGATCTTAGCCTTCACGTTCTCGATGGTGTCTGATGGCTCGACG 248 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || ||||| ||||| || ||||| |||||||| ||||||||| Sbjct 249 TCCAAGGTGATAGTCTTTCCTGTGAGAGTCTTCACAAAGATTTGCATT 296 >seq8188 Length=937 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | |||||| || || | ||||| ||| |||||| || | || || ||||| Sbjct 415 CCACCTCTCAGTCTCAAGACGAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGAA 356 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | |||| ||||| | ||||||||| || || | || ||||||||||| || Sbjct 355 AGGGTTCTGCCGTCTTCCAACTATTTGCCGGCGAAGATGAGTCTCTGTTGATCGGGTGGG 296 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| | || || | | | ||||| | ||||||| Sbjct 295 ATTCCTTCTTTGTCCTGGATCTTAGCCTTCACGTTCTCGATGGTGTCAGATGGCTCGACG 236 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || ||||| ||||| || ||||| |||||||| ||||||||| Sbjct 235 TCCAAGGTGATAGTCTTTCCTGTGAGAGTCTTCACAAAGATTTGCATT 188 >seq34605 Length=375 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 42953 CGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTT 43012 |||| ||||| | ||||||||| || || | || ||||||||||| || | ||||||| Sbjct 345 CGTCTTCCAACTATTTGCCGGCGAAGATGAGTCTCTGTTGATCGGGTGGGATTCCTTCTT 286 Query 43013 TTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTA 43072 | || |||| | || || | | | ||||| | ||||||||| | || | Sbjct 285 TGTCCTGGATCTTAGCCTTCACGTTCTCGATGGTGTCTGATGGCTCGACGTCCAAGGTGA 226 Query 43073 TAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| ||||| || ||||| |||||||| ||||||||| Sbjct 225 TAGTCTTTCCTGTGAGAGTCTTCACAAAGATTTGCATT 188 >seq26910 Length=204 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 42953 CGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTT 43012 |||| ||||| | ||||||||| || || | || ||||||||||| || | ||||||| Sbjct 11 CGTCTTCCAACTATTTGCCGGCGAAGATGAGTCTCTGTTGATCGGGTGGGATTCCTTCTT 70 Query 43013 TTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTA 43072 | || |||| | || || | | | ||||| | ||||||||| | || | Sbjct 71 TGTCCTGGATCTTAGCCTTCACGTTCTCGATGGTGTCAGATGGCTCGACGTCCAAGGTGA 130 Query 43073 TAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| ||||| || ||||| |||||||| ||||||||| Sbjct 131 TAGTCTTTCCTGTGAGAGTCTTCACAAAGATTTGCATT 168 >seq15309 Length=375 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 42953 CGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTT 43012 |||| ||||| | ||||||||| || || | || ||||||||||| || | ||||||| Sbjct 365 CGTCTTCCAACTATTTGCCGGCGAAGATGAGTCTCTGTTGATCGGGTGGGATTCCTTCTT 306 Query 43013 TTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTA 43072 | || |||| | || || | | | ||||| | ||||||||| | || | Sbjct 305 TGTCCTGGATCTTAGCCTTCACGTTCTCGATGGTGTCAGATGGCTCGACGTCCAAGGTGA 246 Query 43073 TAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| ||||| || ||||| |||||||| ||||||||| Sbjct 245 TAGTCTTTCCTGTGAGAGTCTTCACAAAGATTTGCATT 208 >seq5479 Length=395 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 42953 CGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTT 43012 |||| ||||| | ||||||||| || || | || ||||||||||| || | ||||||| Sbjct 31 CGTCTTCCAACTATTTGCCGGCGAAGATGAGTCTCTGTTGATCGGGTGGGATTCCTTCTT 90 Query 43013 TTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTA 43072 | || |||| | || || | | | ||||| | ||||||||| | || | Sbjct 91 TGTCCTGGATCTTAGCCTTCACGTTCTCGATGGTGTCAGATGGCTCGACGTCCAAGGTGA 150 Query 43073 TAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| ||||| || ||||| |||||||| ||||||||| Sbjct 151 TAGTCTTTCCTGTGAGAGTCTTCACAAAGATTTGCATT 188 >seq1537 Length=355 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 42953 CGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTT 43012 |||| ||||| | ||||||||| || || | || ||||||||||| || | ||||||| Sbjct 11 CGTCTTCCAACTATTTGCCGGCGAAGATGAGTCTCTGTTGATCGGGTGGGATTCCTTCTT 70 Query 43013 TTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTA 43072 | || |||| | || || | | | ||||| | ||||||||| | || | Sbjct 71 TGTCCTGGATCTTAGCCTTCACGTTCTCGATGGTGTCTGATGGCTCGACGTCCAAGGTGA 130 Query 43073 TAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| ||||| || ||||| |||||||| ||||||||| Sbjct 131 TAGTCTTTCCTGTGAGAGTCTTCACAAAGATTTGCATT 168 >seq25823 Length=903 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | ||| || | ||||||||||| || |||||||| | ||||| || ||| Sbjct 659 CCACCTCTCAGCCTCAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAC 600 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | |||| || | || || || ||||| || | || ||||||||||| || Sbjct 599 AAGGTCCTGCCGTCTTCAAGCTGCTTTCCTGCAAAGATGAGTCTCTGTTGATCGGGGGGA 540 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| || || || |||| | ||||| | ||| |||||| || ||| || Sbjct 539 ATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCAACA 480 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || ||||| || || || || || || |||||||| Sbjct 479 TCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 433 >seq22711 Length=903 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | ||| || | ||||||||||| || |||||||| | ||||| || ||| Sbjct 659 CCACCTCTCAGCCTCAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAC 600 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | |||| || | || || || ||||| || | || ||||||||||| || Sbjct 599 AAGGTCCTGCCGTCTTCAAGCTGCTTTCCTGCAAAGATGAGTCTCTGTTGATCGGGGGGA 540 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| || || || |||| | ||||| | ||| |||||| || ||| || Sbjct 539 ATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATAGTGTCGGAAGGCTCAACA 480 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || ||||| || || || || || || |||||||| Sbjct 479 TCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 433 >seq4283 Length=919 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | ||| || | ||||||||||| || |||||||| | ||||| || ||| Sbjct 261 CCACCTCTCAGCCTCAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAC 320 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | |||| || | || || || ||||| || | || ||||||||||| || Sbjct 321 AAGGTCCTGCCGTCTTCAAGCTGCTTTCCTGCAAAGATGAGTCTCTGTTGATCGGGGGGA 380 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| || || || |||| | ||||| | ||| |||||| || ||| || Sbjct 381 ATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCAACA 440 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || ||||| || || || || || || |||||||| Sbjct 441 TCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381172443596244