Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq25860 167 3e-36 seq3222 122 1e-22 >seq25860 Length=1350 Score = 167 bits (184), Expect = 3e-36 Identities = 398/594 (67%), Gaps = 12/594 (2%) Strand=Plus/Minus Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138 ||||| || || ||||| || || | ||| || || || |||||||| ||||| || || Sbjct 947 GTGCATGCCTTCGTCTCTGCTGATAAGTTCATTCGAGAAGGTGAGTCCAGGCATAAGCCC 888 Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAAGATTCCTTCTACTG 42197 | ||| || ||||| || || || ||| | | | || |||||||||||||||||||||| Sbjct 887 CCTCTTCTTGAGCCAGAAGATCGA-GCAGAAGCTGCCCGAAAAGAAGATTCCTTCTACTG 829 Query 42198 CCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC--ATGT-ATCCACTTTTGAG 42254 ||||||| || | ||||||||| | || | | |||| | | ||||| | | Sbjct 828 CCGCAAACGCTACGAGTCTCTCTGCGTA---GCTATTGTCGGAGCTGATCCAACGCAGGG 772 Query 42255 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 42314 |||| || |||||||| || || || || | ||| |||| || ||||| ||| || Sbjct 771 CCCAGTCAGCCTTCTTCTTCACGACGGGGATGTTGTCTGTGGCTTTGAAGAGGAAGTCTT 712 Query 42315 tttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGT 42374 | || || || || | || || ||||| | || || | || || || |||| Sbjct 711 TCTCGTTTTGGTCGTTGATGTAGGTGTCGATTAGCAGGGAGTAGGTCTCAGAGTGGATGT 652 Query 42375 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTAC 42434 |||| || ||||| || |||||||| || | || || | ||||| | || || | Sbjct 651 TTTCCATCATCATCTAGAAGCCGTAGAAGCACCGCGCTTCAGGCACCTGGATCTCGGTGC 592 Query 42435 AAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 42494 | |||| ||| || || || || || ||||| || || || || || | | Sbjct 591 AGAATCTCATAGCCAAGTTCTCAAGAACGATGCCGTCTGATGCGGCGAAGAAGGCTAGCA 532 Query 42495 CATGTTTTATAAAATATTTTTCGT--CCGGTGTTAATTTATTCCAATCATTGATATCTTT 42552 | | || || || | | | |||| ||||| | | | | |||||| |||| || | Sbjct 531 CGTACTTGATGAAGTGTCTCTCGTTGTCGGTG--AGTCTCTCCCAATCTTTGAGGTCCTG 474 Query 42553 AGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCA 42612 || | ||| | |||||| | ||||| || |||| | | ||| ||||| ||||| Sbjct 473 AGCCAAATCGATTTCTTCGGCAGTCCAGAAGCATGCAACCTGATCTTTGTACATCTTCCA 414 Query 42613 GATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAG 42666 |||||||| || | ||| || | || ||||||||||| || ||| | |||| Sbjct 413 GATATCATTGTACTTAATGGGTAGGATGACAAATCTATTAGGGTTTTCTTCAAG 360 >seq3222 Length=1589 Score = 122 bits (134), Expect = 1e-22 Identities = 543/852 (64%), Gaps = 6/852 (1%) Strand=Plus/Minus Query 71697 GGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTC 71756 ||||| || || || || || || || || |||| ||| || || | || || || Sbjct 1565 GGCAATGGAGGCGAGGTTGCAGACAGCGACTTCATCGGCAGAGGTGTACTCGATGATCTC 1506 Query 71757 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 71816 |||||| || || | |||| || || ||||| ||||| | || || || |||||| Sbjct 1505 AGTGCACAGGTTTGAAGACTTAATAGTGCCTAAGTTTTGCTAGTTGCTTTTGCGGTTACA 1446 Query 71817 CGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 71876 |||||| || || || || | || || || ||||| |||||| || || ||| | Sbjct 1445 CGCATCTTTGTAGAGCATGTATGGGGTGCCTGTTTCGATCTGACTCTCAATGATCCATCC 1386 Query 71877 CCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATA 71936 ||||| | ||| |||||| | || || |||||| || | || || || ||| Sbjct 1385 CCAGAGTTACCTAGCTTTTATTGTCTTTCTGCCTCTCTTATCCTTCTCATACTGCTCATA 1326 Query 71937 TAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACAT 71996 | || |||| || ||||| | || | | |||||||| ||||| || ||||| Sbjct 1325 CAGCTTCTCAAACTACTCACCCCATGAATCATAGAGGCCAGGACACTCATTTGGGCACAT 1266 Query 71997 CAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 72056 | | ||| || ||||| | | || | ||||| || ||||| || | ||| | ||| Sbjct 1265 AAGAGTCCAATCGCCATCGACCTCCACCCTCTTCATGAAAAGATCTGGCACCCACAAAGC 1206 Query 72057 TATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 72115 ||| || | |||||| | | | || || || || ||||| || | | |||| Sbjct 1205 -ATAGAACAAATCTCTCGCACGCTATTCTTCCTTCCCGTGGTTCTTCTTCAACTGAAGGA 1147 Query 72116 ACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTG 72174 | | |||| || || | ||||| || || | ||| | ||| | ||| | |||| Sbjct 1146 A-GTCATAGATGTCGGCGTGCCAGGGCTCAAGGTAGACGGCGAAGGAACCCTTTCTTTTG 1088 Query 72175 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 72234 || || || || | |||||| | || | || || |||| |||||| || | | Sbjct 1087 CCACCACCTTGGTCAACGTATCTTGATGTATCGTTGTAGACTCGCAACATGGGCACTAAC 1028 Query 72235 CCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATT 72294 || || || ||||| || || ||||| || || || | || || || Sbjct 1027 CCGTTAGAGTATCCATTTGTTCCACGAATATAACTATCAGACGCTCTGATTCTGTGCATG 968 Query 72295 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 72354 | || || || || ||||| || || || | | ||| | || | ||| ||| || Sbjct 967 GCTATCCCAATACCTCCTGCATGCTTCGAAATGATGGAACATTGCTTCAGCGTCTCAAAG 908 Query 72355 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAG-ACATTTGGTGACG 72413 || || || || ||||||| |||||| || || ||||| | || ||| || || Sbjct 907 ATTCCTTCAATTGAATCATCCTTCATGTCCAGCAGGAAACA-CGAGCTCATCTGAGGATT 849 Query 72414 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAG 72473 ||||| ||||| || | ||||| | ||| || || ||||| | || || | Sbjct 848 CGGTGTTCCAGCATTGAACAGAGTAGGTGTAGCATGTGTGAACCACCTCTCTCCCATCAA 789 Query 72474 ATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCAT 72533 || || || |||| ||| | || | ||| | ||| ||||| | |||||||| Sbjct 788 ATCATATGTTTCAAAAGCAGCCTCCAGATCGTCTAAATGGATTCCAATACTCACACGCAT 729 Query 72534 TAACATATGCTG 72545 |||||| ||||| Sbjct 728 TAACATGTGCTG 717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670783345217680