Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq25860 132 7e-26 seq3222 95.1 2e-14 >seq25860 Length=1350 Score = 132 bits (146), Expect = 7e-26 Identities = 364/545 (67%), Gaps = 22/545 (4%) Strand=Plus/Plus Query 124985 TAGATTTACCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCA 125044 ||||||| | | | ||||| | ||| |||| || ||| | ||||||||| | ||| Sbjct 377 TAGATTTGTCATCCTACCCATTAAGTACAATGATATCTGGAAGATGTACAAAGA---TCA 433 Query 125045 GG---CCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGA 125101 || | | ||| ||||| | |||||| ||||| || | ||||||| | |||||||| Sbjct 434 GGTTGCATGCTTCTGGACTGCCGAAGAAATCGATTTGGCTCAGGACCTCAAAGATTGGGA 493 Query 125102 GACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGG 125161 || | | || || | ||| || | || || | || | | |||||||| |||| Sbjct 494 GAGAC---TCACCGACAACGAGAGACACTTCATCAAGTACGTGCTAGCCTTCTTCGCCGC 550 Query 125162 CTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA--TT 125219 || || || ||||| || || || | |||||| ||| | ||| | Sbjct 551 ATCAGACGGCATCGTTCTTGAGAACTTGGCTATGAGATTCTGCACCGAGAT--CCAGGTG 608 Query 125220 CCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATG 125279 || || | | |||||| ||||| ||| | || ||||| || ||| | ||||| || | Sbjct 609 CCTGAAGCGCGGTGCTTCTACGGCTTCTAGATGATGATGGAAAACATCCACTCTGAGACC 668 Query 125280 TACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGT-AAACACATGCTCTTTAA 125338 ||||| || || |||| ||||| ||| || |||| ||| || | ||||| || Sbjct 669 TACTCCCTGCTAATCGACACCTACATCAACGA-CCAAAACGAGAAAGACTTCCTCTTCAA 727 Query 125339 CGCAATCGACACGGTGCC-GTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCG 125397 || | |||| | || ||| | | || |||||| | |||| | || |||||| Sbjct 728 AGCCACAGACAACATCCCCGTCGTGAAG-AAGAAGGCTGACTGGGCCCTGCGTTGGATCA 786 Query 125398 ATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCT 125457 |||||| | ||||| || ||||| || || || || || ||||| || |||| Sbjct 787 GCTCCGACAA---TAGCTACGCAGAGAGACTCGTAGCGTTTGCGGCAGTAGAAGGAATCT 843 Query 125458 TCTTTTCGGGTAG-TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGA 125516 |||||||||| || || ||| | ||||| |||||||||||| | || || ||||| ||| Sbjct 844 TCTTTTCGGGCAGCTTCTGC-TCGATCTTCTGGCTCAAGAAGAGGGGGCTTATGCCTGGA 902 Query 125517 CTGAC 125521 || || Sbjct 903 CTCAC 907 >seq3222 Length=1589 Score = 95.1 bits (104), Expect = 2e-14 Identities = 353/543 (65%), Gaps = 14/543 (3%) Strand=Plus/Plus Query 96798 ATTCATTCAACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCA 96857 |||| | |||||| || || | | || ||||||| ||| | || | ||||| | Sbjct 999 ATTCGTGGAACAAATGGATACTCTAACGGGTTAGTGCCCATGTTGCGAGTCTACAACGAT 1058 Query 96858 ATGTCACGATACGTT-ACACAGG--GCGGCAATAAACGGCCAGGCGCTATAGCCGTCTAC 96914 | ||| |||||||| || ||| | ||||| | | | || | | ||||||||| Sbjct 1059 ACATCAAGATACGTTGACCAAGGTGGTGGCAAAAGAAAG---GGTTCCTTCGCCGTCTAC 1115 Query 96915 TTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTT 96974 | || || |||||||| ||| | | |||||| | || || || ||| || Sbjct 1116 CTTGAGCCCTGGCACGCCGACATCTATGACTTCCTTCAGTTGAAGAAGAACCACGGGAAG 1175 Query 96975 GAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAG 97034 ||||| || || || || ||||| ||||| | |||||||||||| | ||||||||| Sbjct 1176 GAAGAATAGCGTGCGAGAGATTTGTTCTATGCTTTGTGGGTGCCAGATCTTTTCATGAAG 1235 Query 97035 CGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCC 97094 | || | | || |||| | |||| || |||||||| | || || || || | Sbjct 1236 AGGGTGGAGGTCGATGGCGATTGGACTCTTATGTGCCCAAATGAGTGTCCTGGCCTCTAT 1295 Query 97095 GATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATAC 97154 |||| ||||| || |||||||| ||| | || ||| | || || | Sbjct 1296 GATTCATGGGGTGAGTAGTTTGAGAAGCTGTATGAGCAGTATGAGAAGGATAAGAGAGGC 1355 Query 97155 -GTGAGACGAGTCGATGCACGAGAA--CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAG 97211 | |||| | | | || | || ||| ||| || ||| | | |||| | || Sbjct 1356 AGAAAGAC-AATAAAAGCTAGGTAACTCTGGGGATGG--ATCATTGAGAGTCAGATCGAA 1412 Query 97212 ACTGGAACTCCGTACATTCTCTACAAGGATACCGTG-AATCGCAACAGCAACCAACGCCA 97270 || || || || ||||| |||||||| ||| |||| || ||||| |||||| | | | Sbjct 1413 ACAGGCACCCCATACATGCTCTACAAAGAT-GCGTGTAACCGCAAAAGCAACTAGCAAAA 1471 Query 97271 CTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGA 97330 ||| ||||| || ||| || || |||||||| || || | |||||| ||||| | || Sbjct 1472 CTTAGGCACTATTAAGTCTTCAAACCTGTGCACTGAGATCATCGAGTACACCTCTGCCGA 1531 Query 97331 CGA 97333 || Sbjct 1532 TGA 1534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740666271885680