Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq39418 113 3e-20 seq39092 113 3e-20 seq8188 113 3e-20 seq20653 89.7 4e-13 seq5093 89.7 4e-13 >seq39418 Length=937 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| ||| || || | ||| |||||||| || || || ||||| || ||| Sbjct 523 CCACCTCTCAGTCTCAAGACGAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGAG 582 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| ||||||| || | |||||| ||| | || | | ||||| ||| ||| Sbjct 583 AGGGTTCTGCCGTCTTCCAACTATTTGCCGGCGAAGATGAGTCTCTGTTGATCGGGTGGG 642 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||||||||| || || ||| || | || ||||| || || || Sbjct 643 ATTCCTTCTTTGTCCTGGATCTTAGCCTTCACGTTCTCGATGGTGTCTGATGGCTCGACG 702 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || || || ||||| ||||| || ||||| |||||||| Sbjct 703 TCCAAGGTGATAGTCTTTCCTGTGAGAGTCTTCACAAAGATTTGCAT 749 >seq39092 Length=483 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| ||| || || | ||| |||||||| || || || ||||| || ||| Sbjct 69 CCACCTCTCAGTCTCAAGACGAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGAG 128 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| ||||||| || | |||||| ||| | || | | ||||| ||| ||| Sbjct 129 AGGGTTCTGCCGTCTTCCAACTATTTGCCGGCGAAGATGAGTCTCTGTTGATCGGGTGGG 188 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||||||||| || || ||| || | || ||||| || || || Sbjct 189 ATTCCTTCTTTGTCCTGGATCTTAGCCTTCACGTTCTCGATGGTGTCTGATGGCTCGACG 248 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || || || ||||| ||||| || ||||| |||||||| Sbjct 249 TCCAAGGTGATAGTCTTTCCTGTGAGAGTCTTCACAAAGATTTGCAT 295 >seq8188 Length=937 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| ||| || || | ||| |||||||| || || || ||||| || ||| Sbjct 415 CCACCTCTCAGTCTCAAGACGAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGAA 356 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| ||||||| || | |||||| ||| | || | | ||||| ||| ||| Sbjct 355 AGGGTTCTGCCGTCTTCCAACTATTTGCCGGCGAAGATGAGTCTCTGTTGATCGGGTGGG 296 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||||||||| || || ||| || | || ||||| || || || Sbjct 295 ATTCCTTCTTTGTCCTGGATCTTAGCCTTCACGTTCTCGATGGTGTCAGATGGCTCGACG 236 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || || || ||||| ||||| || ||||| |||||||| Sbjct 235 TCCAAGGTGATAGTCTTTCCTGTGAGAGTCTTCACAAAGATTTGCAT 189 >seq20653 Length=689 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| ||| || || | ||| |||||||| || || || ||||| || ||| Sbjct 167 CCACCTCTCAGTCTCAAGACGAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGAA 108 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| ||||||| || | |||||| ||| | || | | ||||| ||| ||| Sbjct 107 AGGGTTCTGCCGTCTTCCAACTATTTGCCGGCGAAGATGAGTCTCTGTTGATCGGGTGGG 48 Query 15257 ATTCCTTCTTTGTC 15270 |||||||||||||| Sbjct 47 ATTCCTTCTTTGTC 34 >seq5093 Length=302 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| ||| || || | ||| |||||||| || || || ||||| || ||| Sbjct 167 CCACCTCTCAGTCTCAAGACGAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGAG 108 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| ||||||| || | |||||| ||| | || | | ||||| ||| ||| Sbjct 107 AGGGTTCTGCCGTCTTCCAACTATTTGCCGGCGAAGATGAGTCTCTGTTGATCGGGTGGG 48 Query 15257 ATTCCTTCTTTGTC 15270 |||||||||||||| Sbjct 47 ATTCCTTCTTTGTC 34 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361991964445338