Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq36835 91.5 1e-13 seq16860 91.5 1e-13 seq22711 86.0 5e-12 seq25823 82.4 6e-11 seq4283 82.4 6e-11 >seq36835 Length=903 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 19974 ATCATTTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGT 20033 |||||| ||| |||| | ||||| ||||||||| || || ||||| ||||| ||||||| Sbjct 667 ATCATTGTCCACCTCTCAGCCTCAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGT 608 Query 20034 AATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGAT 20093 | || || ||| | ||| || | || || || ||| | || || |||||||||| Sbjct 607 AGTCAGACAAGGTTCTGCCATCCTCAAGCTGCTTTCCAGCAAAGATGAGTCTCTGTTGAT 548 Query 20094 CGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAG 20153 || ||| | || || ||||| || ||| || || | ||| || ||| || Sbjct 547 CGGGGGGAATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATAGTGTCGGAAG 488 Query 20154 GTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | || || | || ||||| || || |||| || ||||| || |||||||| Sbjct 487 GCTCAACATCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 433 >seq16860 Length=798 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 19974 ATCATTTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGT 20033 |||||| ||| |||| | ||||| ||||||||| || || ||||| ||||| ||||||| Sbjct 667 ATCATTGTCCACCTCTCAGCCTCAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGT 608 Query 20034 AATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGAT 20093 | || || ||| | ||| || | || || || ||| | || || |||||||||| Sbjct 607 AGTCAGACAAGGTTCTGCCATCCTCAAGCTGCTTTCCAGCAAAGATGAGTCTCTGTTGAT 548 Query 20094 CGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAG 20153 || ||| | || || ||||| || ||| || || | ||| || ||| || Sbjct 547 CGGGGGGAATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATAGTGTCGGAAG 488 Query 20154 GTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | || || | || ||||| || || |||| || ||||| || |||||||| Sbjct 487 GCTCAACATCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 433 >seq22711 Length=903 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 19974 ATCATTTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGT 20033 |||||| ||| |||| | ||||| ||||||||| || || ||||| ||||| ||||||| Sbjct 667 ATCATTGTCCACCTCTCAGCCTCAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGT 608 Query 20034 AATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGAT 20093 | || || || | ||||| | || || || ||| | || || |||||||||| Sbjct 607 AGTCAGACAAGGTCCTGCCGTCTTCAAGCTGCTTTCCTGCAAAGATGAGTCTCTGTTGAT 548 Query 20094 CGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAG 20153 || ||| | || || ||||| || ||| || || | ||| || ||| || Sbjct 547 CGGGGGGAATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATAGTGTCGGAAG 488 Query 20154 GTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | || || | || ||||| || || |||| || ||||| || |||||||| Sbjct 487 GCTCAACATCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 433 >seq25823 Length=903 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 19974 ATCATTTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGT 20033 |||||| ||| |||| | ||||| ||||||||| || || ||||| ||||| ||||||| Sbjct 667 ATCATTGTCCACCTCTCAGCCTCAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGT 608 Query 20034 AATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGAT 20093 | || || || | ||||| | || || || ||| | || || |||||||||| Sbjct 607 AGTCAGACAAGGTCCTGCCGTCTTCAAGCTGCTTTCCTGCAAAGATGAGTCTCTGTTGAT 548 Query 20094 CGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAG 20153 || ||| | || || ||||| || ||| || || | ||| | ||| || Sbjct 547 CGGGGGGAATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTTTCAATGGTGTCGGAAG 488 Query 20154 GTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | || || | || ||||| || || |||| || ||||| || |||||||| Sbjct 487 GCTCAACATCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 433 >seq4283 Length=919 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 19974 ATCATTTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGT 20033 |||||| ||| |||| | ||||| ||||||||| || || ||||| ||||| ||||||| Sbjct 253 ATCATTGTCCACCTCTCAGCCTCAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGT 312 Query 20034 AATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGAT 20093 | || || || | ||||| | || || || ||| | || || |||||||||| Sbjct 313 AGTCAGACAAGGTCCTGCCGTCTTCAAGCTGCTTTCCTGCAAAGATGAGTCTCTGTTGAT 372 Query 20094 CGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAG 20153 || ||| | || || ||||| || ||| || || | ||| | ||| || Sbjct 373 CGGGGGGAATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTTTCAATGGTGTCGGAAG 432 Query 20154 GTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | || || | || ||||| || || |||| || ||||| || |||||||| Sbjct 433 GCTCAACATCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419370286267458