Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq25860 163 4e-35 seq3222 127 3e-24 >seq25860 Length=1350 Score = 163 bits (180), Expect = 4e-35 Identities = 392/594 (66%), Gaps = 12/594 (2%) Strand=Plus/Minus Query 33318 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 33377 ||||| || |||||||| || || ||||| || || || |||||||| ||||| || || Sbjct 947 GTGCATGCCTTCGTCTCTGCTGATAAGTTCATTCGAGAAGGTGAGTCCAGGCATAAGCCC 888 Query 33378 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGC 33437 | ||| || ||||| || || || ||| || ||||||||||||||||||||||| Sbjct 887 CCTCTTCTTGAGCCAGAAGATCGAGCAGAAGCTGCCCGAAAAGAAGATTCCTTCTACTGC 828 Query 33438 AGCAAAGGCAATAAGTCTCTCTCCATAAC------CGGCGCTGTCATGTATCCACTTTTG 33491 ||||| || | ||||||||| | || | ||| |||| ||||| | Sbjct 827 CGCAAACGCTACGAGTCTCTCTGCGTAGCTATTGTCGGAGCTG------ATCCAACGCAG 774 Query 33492 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 33551 ||||| || |||||||| || || || || | ||| |||| || ||||| ||| Sbjct 773 GGCCCAGTCAGCCTTCTTCTTCACGACGGGGATGTTGTCTGTGGCTTTGAAGAGGAAGTC 714 Query 33552 tttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAAT 33611 ||| || || || || | || || ||||| | || || | || || || || Sbjct 713 TTTCTCGTTTTGGTCGTTGATGTAGGTGTCGATTAGCAGGGAGTAGGTCTCAGAGTGGAT 654 Query 33612 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGT 33671 |||||| || ||||| || |||||||| || | || || | | ||| | || || Sbjct 653 GTTTTCCATCATCATCTAGAAGCCGTAGAAGCACCGCGCTTCAGGCACCTGGATCTCGGT 594 Query 33672 ACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 33731 || |||| ||||| || ||| || || ||||| || || || || || | Sbjct 593 GCAGAATCTCATAGCCAAGTTCTCAAGAACGATGCCGTCTGATGCGGCGAAGAAGGCTAG 534 Query 33732 TACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTT 33791 || | || || || | | | |||| || ||| | | |||||| |||| || | Sbjct 533 CACGTACTTGATGAAGTGTCTCTCGTTGTCGGTGAGTCTCTCCCAATCTTTGAGGTCCTG 474 Query 33792 AGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCA 33851 || | ||| | |||||| | ||||| || |||| | | ||| ||||| ||||| Sbjct 473 AGCCAAATCGATTTCTTCGGCAGTCCAGAAGCATGCAACCTGATCTTTGTACATCTTCCA 414 Query 33852 GATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAG 33905 ||| |||| || | || || | || ||||||||||| || ||| | |||| Sbjct 413 GATATCATTGTACTTAATGGGTAGGATGACAAATCTATTAGGGTTTTCTTCAAG 360 >seq3222 Length=1589 Score = 127 bits (140), Expect = 3e-24 Identities = 551/857 (64%), Gaps = 16/857 (2%) Strand=Plus/Minus Query 62891 GGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 62950 ||||| || || || || || || || || |||| ||| | || | || ||||| Sbjct 1565 GGCAATGGAGGCGAGGTTGCAGACAGCGACTTCATCGGCAGAGGTGTACTCGATGATCTC 1506 Query 62951 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63010 |||||| || || | |||| ||||| ||||| ||||| | || || || |||||| Sbjct 1505 AGTGCACAGGTTTGAAGACTTAATAGTGCCTAAGTTTTGCTAGTTGCTTTTGCGGTTACA 1446 Query 63011 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63070 |||||| || || || ||| |||| || || ||||| |||||| || || ||| | Sbjct 1445 CGCATCTTTGTAGAGCATGTATGGGGTGCCTGTTTCGATCTGACTCTCAATGATCCATCC 1386 Query 63071 CCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTG--TA 63128 ||||| | ||| |||||| | ||| | ||| || || ||| ||| || | Sbjct 1385 CCAGAGTTACCTAGCTTTTATTGT--CTTTCTGCCTCTCTTATCCTTCTCATACTGCTCA 1328 Query 63129 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 63188 |||| || |||| || ||||| || | | |||||||| |||| || ||| Sbjct 1327 TACAGCTTCTCAAACTACTCACCCCATGAATCATAGAGGCCAGGACACTCATTTGGGCAC 1268 Query 63189 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 63248 || | | ||| || || || ||| ||| | ||||| || ||||| || | ||| | | Sbjct 1267 ATAAGAGTCCAATCGCCATCGACCTCCACCCTCTTCATGAAAAGATCTGGCACCCACAAA 1208 Query 63249 GCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63307 || ||| || | |||||| | | | ||| || || || ||||| || | | || Sbjct 1207 GC-ATAGAACAAATCTCTCGCACGCTATTCTTCCTTCCCGTGGTTCTTCTTCAACTGAAG 1149 Query 63308 GAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63366 ||| | |||| || || | ||||| || || | ||| | ||| | || | || Sbjct 1148 GAA-GTCATAGATGTCGGCGTGCCAGGGCTCAAGGTAGACGGCGAAGGAACCCTTTCTTT 1090 Query 63367 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63426 || || || || || | |||||| | || | || || |||| |||||| || | | Sbjct 1089 TGCCACCACCTTGGTCAACGTATCTTGATGTATCGTTGTAGACTCGCAACATGGGCACTA 1030 Query 63427 TACCGTTTGA-TATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTA 63485 ||||| || ||| ||||| || || ||||| || || || | || | Sbjct 1029 ACCCGTTAGAGTAT-CCATTTGTTCCACGAATATAACTATCAGACGCTCTGATTCTGTGC 971 Query 63486 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCA 63545 || | || || || || ||||| || || || | | ||| | || | ||| ||| Sbjct 970 ATGGCTATCCCAATACCTCCTGCATGCTTCGAAATGATGGAACATTGCTTCAGCGTCTCA 911 Query 63546 TAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAG-ACATTTGGTG 63604 |||| || || || |||||| |||||| || || ||||| | || ||| || | Sbjct 910 AAGATTCCTTCAATTGAATCATCCTTCATGTCCAGCAGGAAACA-CGAGCTCATCTGAGG 852 Query 63605 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 63664 | ||||| ||||| || | ||||| | ||| || || ||||| | || | Sbjct 851 ATTCGGTGTTCCAGCATTGAACAGAGTAGGTGTAGCATGTGTGAACCACCTCTCTCCCAT 792 Query 63665 TAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC--TACTGCGACA 63722 | || || || |||| ||| | || | ||| | ||| ||||| |||| ||| Sbjct 791 CAAATCATATGTTTCAAAAGCAGCCTCCAGATCGTCTAAATGGATTCCAATACT--CACA 734 Query 63723 CGCATTAACATGTGCTG 63739 ||||||||||||||||| Sbjct 733 CGCATTAACATGTGCTG 717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622616897820880