Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3222 286 9e-72 seq23919 89.7 1e-12 >seq3222 Length=1589 Score = 286 bits (316), Expect = 9e-72 Identities = 589/871 (68%), Gaps = 4/871 (0%) Strand=Plus/Plus Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 ||||| || || | |||||| |||||||||||||| |||||| ||||||| ||| Sbjct 702 ATTGTCGAGCGTCTGCAGCACATGTTAATGCGTGTGAGTATTGGAATCCATTTAGACGAT 761 Query 363502 GTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACG 363561 | || || || ||||||||||| | | | | | | ||||| || || || Sbjct 762 CTGGAGGCTGCTTTTGAAACATATGATTTGATGGGAGAGAGGTGGTTCACACATGCTACA 821 Query 363562 CCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAA 363621 || || ||| |||||||||||| | ||||| |||||| || || || || || | Sbjct 822 CCTACTCTGTTCAATGCTGGAACACCGAATCCTCAGATGAGCTCGTGTTTCCTGCTGGAC 881 Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 |||||||| ||||| || || || |||||||| || || ||| | ||| | | ||||| Sbjct 882 ATGAAGGATGATTCAATTGAAGGAATCTTTGAGACGCTGAAGCAATGTTCCATCATTTCG 941 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATT 363741 ||| ||||||| || ||||| || | || |||| | | || | ||||| ||| Sbjct 942 AAGCATGCAGGAGGTATTGGGATAGCCATGCACAGAATCAGAGCGTCTGATAGTTATATT 1001 Query 363742 CGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACT 363801 || || ||| |||||||| || ||| | || |||||| | || || | || |||| Sbjct 1002 CGTGGAACAAATGGATACTCTAACGGGTTAGTGCCCATGTTGCGAGTCTACAACGATACA 1061 Query 363802 GCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAG 363861 | || ||||| ||||| ||||| || || | || || | || || | || || ||| Sbjct 1062 TCAAGATACGTTGACCAAGGTGGTGGCAAAAGAAAGGGTTCCTTCGCCGTCTACCTTGAG 1121 Query 363862 CCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA-AAACACGGGAAAAGAGGA 363920 || || ||||| || | ||| || ||| || | ||| || |||||| || || || Sbjct 1122 CCCTGGCACGCCGACATCTATGACTTCCTTCAGTTGAAGAAGAACCACGGG-AAGGAAGA 1180 Query 363921 ATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGT 363980 || |||||| | ||| |||||||||| | ||||| | || | ||| |||||| | || Sbjct 1181 ATAGCGTGCGAGAGATTTGTTCTATGCTTTGTGGGTGCCAGATCTTTTCATGAAGAGGGT 1240 Query 363981 GGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGT 364040 ||||| | | ||||| | || | |||||| | || ||||| || || | ||| Sbjct 1241 GGAGGTCGATGGCGATTGGACTCTTATGTGCCCAAATGAGTGTCCTGGCCTCTATGATTC 1300 Query 364041 ATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGA-GGGAAAGGCTCGTA 364099 ||||||||| | | || || || || ||||||| ||| || |||| | | Sbjct 1301 ATGGGGTGAGTAGTTTGAGAAGCTGTATGAGCAGTATGAGAAGGATAAGAGAGGC-AGAA 1359 Query 364100 AGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAA 364159 ||||||| || | | || ||| ||||| || ||||| || ||||| | Sbjct 1360 AGACAATAAAAGCTAGGTAACTCTGGGGATGGATCATTGAGAGTCAGATCGAAACAGGCA 1419 Query 364160 CACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTA 364219 | || || ||| | ||||||||| |||| |||||||| |||| |||| || | || | Sbjct 1420 CCCCATACATGCTCTACAAAGATGCGTGTAACCGCAAAAGCAACTAGCAAAACTTAGGCA 1479 Query 364220 CAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTG 364279 | ||| || ||||| || || ||||| || || |||||| || |||| || | Sbjct 1480 CTATTAAGTCTTCAAACCTGTGCACTGAGATCATCGAGTACACCTCTGCCGATGAAGTCG 1539 Query 364280 CCGTATGTAACCTTGCGTCGATCGCGCTTCC 364310 | || || ||||| || || || || ||||| Sbjct 1540 CTGTCTGCAACCTCGCCTCCATTGCCCTTCC 1570 >seq23919 Length=1798 Score = 89.7 bits (98), Expect = 1e-12 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 111351 GGAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGC--AAATGAACTTG 111408 ||| ||| |||||||| | |||||||| | |||| ||| ||||| ||||| || Sbjct 992 GGAGTTGCTGAAGAACTCATTTGGTTTATCGGTGGAAATACCAATGCCAAAATG--CTGA 1049 Query 111409 CAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTC-AGTT 111467 | || || ||| || |||||||| |||| | | || || | ||| ||| Sbjct 1050 GTGATAAGAAAATAAGGATCTGGGATGGGAATGCAAGCAGAGAGTTCTTGGATAAGAGTG 1109 Query 111468 GGTCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCAC 111527 ||| | |||| |||||| | || || |||||||| |||||||| |||||||||||| Sbjct 1110 GGTTCACT-GACAGGGAAGAATGGGACCTAGGACCAGTCTACGGATTCCAATGGCGCCAC 1168 Query 111528 TTTGGTGCAGACTACAAAACCATGCACGA 111556 |||||||| | |||| |||||||| || Sbjct 1169 TTTGGTGCTCAATACACTACCATGCATGA 1197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302645252570876