Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq39865 127 1e-24 seq39418 82.4 5e-11 seq39092 82.4 5e-11 >seq39865 Length=6310 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||||||||||||||| || |||||||| Sbjct 5190 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 5131 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||| ||||||||||| Sbjct 5130 TGATCCATTCATGCGCGTCACTAGTTAGATGACGA 5096 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| ||||||||||||||||||| || | Sbjct 3210 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCTTCACAGTACTTGTTCGCTATCGGTTTCCC 3151 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||||| Sbjct 3150 ACATATATTTAGCCTTA 3134 >seq39418 Length=937 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/232 (68%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| |||||||||| | ||| || | ||| || ||| |||||| || || || || | Sbjct 519 CATT-CCACCTCTCAGTCTCAAGACGAGATGGAGGGTGGACTCCTTCTGGATGTTATAGT 577 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | |||| || || | ||| ||||| || || || | |||||||||| Sbjct 578 CGGAGAGGGTTCTGCCGTCTTCCAACTATTTGCCGGCGAAGATGAGTCTCTGTTGATCGG 637 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| |||||||||||| || || |||||| |||| || || ||| | Sbjct 638 GTGGGATTCCTTCTTTGTCCTGGATCTTAGCCTTCACGTTCTCGATGGTGTCTGATGGCT 697 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || ||||| || || || | || ||||| || || ||||| Sbjct 698 CGACGTCCAAGGTGATAGTCTTTCCTGTGAGAGTCTTCACAAAGATTTGCAT 749 >seq39092 Length=483 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/232 (68%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| |||||||||| | ||| || | ||| || ||| |||||| || || || || | Sbjct 65 CATT-CCACCTCTCAGTCTCAAGACGAGATGGAGGGTGGACTCCTTCTGGATGTTATAGT 123 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | |||| || || | ||| ||||| || || || | |||||||||| Sbjct 124 CGGAGAGGGTTCTGCCGTCTTCCAACTATTTGCCGGCGAAGATGAGTCTCTGTTGATCGG 183 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| |||||||||||| || || |||||| |||| || || ||| | Sbjct 184 GTGGGATTCCTTCTTTGTCCTGGATCTTAGCCTTCACGTTCTCGATGGTGTCTGATGGCT 243 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || ||||| || || || | || ||||| || || ||||| Sbjct 244 CGACGTCCAAGGTGATAGTCTTTCCTGTGAGAGTCTTCACAAAGATTTGCAT 295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334774042555358