Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq25860 154 2e-32 seq3222 129 7e-25 >seq25860 Length=1350 Score = 154 bits (170), Expect = 2e-32 Identities = 388/588 (66%), Gaps = 14/588 (2%) Strand=Plus/Minus Query 32682 CCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 32741 || |||||||| || || | ||| || || || |||||||| ||||| || || | ||| Sbjct 940 CCTTCGTCTCTGCTGATAAGTTCATTCGAGAAGGTGAGTCCAGGCATAAGCCCCCTCTTC 881 Query 32742 TTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTCCTTCTACTGCCGCAAA 32800 || ||||| || || || ||| | | | || |||||||| |||||||||||||||||||| Sbjct 880 TTGAGCCAGAAGATCGA-GCAGAAGCTGCCCGAAAAGAAGATTCCTTCTACTGCCGCAAA 822 Query 32801 GGCAATAAGTCTCTCTCCATAAC------CGGCGCTGTCATGTATCCACTTTTGAGCCCA 32854 || | ||||||||| | || | ||| |||| ||||| | ||||| Sbjct 821 CGCTACGAGTCTCTCTGCGTAGCTATTGTCGGAGCTG------ATCCAACGCAGGGCCCA 768 Query 32855 ATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttC 32914 || |||||||| || || || || | ||| | || || ||||| ||| ||| || Sbjct 767 GTCAGCCTTCTTCTTCACGACGGGGATGTTGTCTGTGGCTTTGAAGAGGAAGTCTTTCTC 708 Query 32915 ATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTC 32974 || || || | || || || || | || || | || || || |||||||| Sbjct 707 GTTTTGGTCGTTGATGTAGGTGTCGATTAGCAGGGAGTAGGTCTCAGAGTGGATGTTTTC 648 Query 32975 AATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAA 33034 || ||| | || ||||||||||| | || || | | ||| | || || || || Sbjct 647 CATCATCATCTAGAAGCCGTAGAAGCACCGCGCTTCAGGCACCTGGATCTCGGTGCAGAA 588 Query 33035 TCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 33094 || || || || ||| || || ||||| || || || || || | || | Sbjct 587 TCTCATAGCCAAGTTCTCAAGAACGATGCCGTCTGATGCGGCGAAGAAGGCTAGCACGTA 528 Query 33095 TTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATAT 33154 || || || | | | |||| || ||| | | |||||| |||| || | || | Sbjct 527 CTTGATGAAGTGTCTCTCGTTGTCGGTGAGTCTCTCCCAATCTTTGAGGTCCTGAGCCAA 468 Query 33155 ATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTC 33214 ||| | |||||| | ||||| || |||| | | ||| ||||| |||||||| || Sbjct 467 ATCGATTTCTTCGGCAGTCCAGAAGCATGCAACCTGATCTTTGTACATCTTCCAGATATC 408 Query 33215 ATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAG 33262 || || | ||| || | || ||||||||||| || |||| | |||| Sbjct 407 ATTGTACTTAATGGGTAGGATGACAAATCTATTAGGGTTTTCTTCAAG 360 >seq3222 Length=1589 Score = 129 bits (142), Expect = 7e-25 Identities = 551/856 (64%), Gaps = 16/856 (2%) Strand=Plus/Minus Query 62747 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 62806 |||| || || || || || || || || |||| ||| | || | || |||||| Sbjct 1564 GCAATGGAGGCGAGGTTGCAGACAGCGACTTCATCGGCAGAGGTGTACTCGATGATCTCA 1505 Query 62807 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 62866 ||||| || || | |||| || || ||||| ||||| | || || || ||||||| Sbjct 1504 GTGCACAGGTTTGAAGACTTAATAGTGCCTAAGTTTTGCTAGTTGCTTTTGCGGTTACAC 1445 Query 62867 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 62926 ||||| || || || ||| |||| || || ||||| |||||| || || ||| | | Sbjct 1444 GCATCTTTGTAGAGCATGTATGGGGTGCCTGTTTCGATCTGACTCTCAATGATCCATCCC 1385 Query 62927 CAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTG--TAT 62984 |||| | ||| |||||| | ||| | |||| || || ||| ||| || || Sbjct 1384 CAGAGTTACCTAGCTTTTATTGT--CTTTCTGCCTCTCTTATCCTTCTCATACTGCTCAT 1327 Query 62985 ACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACA 63044 ||| || |||| || ||||| || | || |||||||| |||| || |||| Sbjct 1326 ACAGCTTCTCAAACTACTCACCCCATGAATCATAGAGGCCAGGACACTCATTTGGGCACA 1267 Query 63045 TCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 63104 | | | ||| || || || ||| ||| | ||||| || ||||| || | ||| | || Sbjct 1266 TAAGAGTCCAATCGCCATCGACCTCCACCCTCTTCATGAAAAGATCTGGCACCCACAAAG 1207 Query 63105 CTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 63163 | ||| || | |||||| | | | ||| || || || ||||| || | | ||| Sbjct 1206 C-ATAGAACAAATCTCTCGCACGCTATTCTTCCTTCCCGTGGTTCTTCTTCAACTGAAGG 1148 Query 63164 AACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63222 || | |||| || || | ||||| || || | ||| | ||| | || | ||| Sbjct 1147 AA-GTCATAGATGTCGGCGTGCCAGGGCTCAAGGTAGACGGCGAAGGAACCCTTTCTTTT 1089 Query 63223 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63282 | || || || || | |||||| | || | || || |||| |||||| || | | Sbjct 1088 GCCACCACCTTGGTCAACGTATCTTGATGTATCGTTGTAGACTCGCAACATGGGCACTAA 1029 Query 63283 ACCATTGGATGTA-CCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAA 63341 || || || ||| ||||| || || ||||| || || || | || | | Sbjct 1028 CCCGTTAGA-GTATCCATTTGTTCCACGAATATAACTATCAGACGCTCTGATTCTGTGCA 970 Query 63342 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCAT 63401 | | || || || || ||||| || || || | | ||| | || | ||| ||| Sbjct 969 TGGCTATCCCAATACCTCCTGCATGCTTCGAAATGATGGAACATTGCTTCAGCGTCTCAA 910 Query 63402 AGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAG-ACATTTGGTGA 63460 |||| || || || ||||||| |||||| || || ||||| | || ||| || || Sbjct 909 AGATTCCTTCAATTGAATCATCCTTCATGTCCAGCAGGAAACA-CGAGCTCATCTGAGGA 851 Query 63461 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGT 63520 ||||| ||||| || | ||||| | ||| || || ||||| | || | Sbjct 850 TTCGGTGTTCCAGCATTGAACAGAGTAGGTGTAGCATGTGTGAACCACCTCTCTCCCATC 791 Query 63521 AGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC--TACTGCGACAC 63578 | || || || |||| ||| | || | ||| | ||| ||||| |||| |||| Sbjct 790 AAATCATATGTTTCAAAAGCAGCCTCCAGATCGTCTAAATGGATTCCAATACT--CACAC 733 Query 63579 GCATTAACATGTGCTG 63594 |||||||||||||||| Sbjct 732 GCATTAACATGTGCTG 717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633296032472800