Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq6720 102 2e-16 seq9778 86.0 1e-11 >seq6720 Length=482 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 345 AGCCCGTCTAGCTCAGTCGGTAGAGCGCTTGACTCTTAATCAAGTGGTCGTGGGTTCGAG 404 Query 142563 CCCCAC 142568 |||||| Sbjct 405 CCCCAC 410 >seq9778 Length=479 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/64 (91%), Gaps = 1/64 (2%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||||||||| ||||||||||||||| |||||||| Sbjct 151 AGCCCGTCTAGCTCAGT-GGTAGAGCGCTAGACTTTTAATCTAGTGGTCGAGGGTTCGAT 93 Query 142563 CCCC 142566 |||| Sbjct 92 CCCC 89 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027278190613538