Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq25860 232 1e-55 seq3222 107 4e-18 >seq25860 Length=1350 Score = 232 bits (256), Expect = 1e-55 Identities = 538/810 (66%), Gaps = 6/810 (1%) Strand=Plus/Plus Query 42335 CTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA 42394 |||||| ||||| || || || |||| ||||| | |||||| ||| | || Sbjct 446 CTGGACTGCCGAAGAAATCGATTTGGCTCAGGACCTCAAAGATTGGGAGAGACTCACCGA 505 Query 42395 GAACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGT 42454 ||||| | ||| |||| || | || |||||||||||||| || |||||||| || Sbjct 506 CAACGAGAGACACTTCATCAAGTACGTGCTAGCCTTCTTCGCCGCATCAGACGGCATCGT 565 Query 42455 CAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTT 42514 ||||||| |||| | || ||| | ||| | ||| ||| ||||| ||||| Sbjct 566 TCTTGAGAACTTGGCTATGAGATTCTGCACCGAGATCCAGGTGCCTGAAGCGCGGTGCTT 625 Query 42515 CTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAA 42574 |||||||||| |||| || || ||| | ||||||||| ||| || || || | Sbjct 626 CTACGGCTTCTAGATGATGATGGAAAACATCCACTCTGAGACCTACTCCCTGCTAATCGA 685 Query 42575 CACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCC 42634 ||| |||||| || | |||| || || ||||| |||| || | || || Sbjct 686 CACCTACATCAACGACCAAAACGAGAAAGACTTCCTCTTCAAAGCCACAGACAACATCCC 745 Query 42635 CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTT 42694 | | | ||||||||||| |||||||| || |||||| || ||||| | | Sbjct 746 CGTCGTGAAGAAGAAGGCTGACTGGGCCCTGCGTTGGATC---AGCTCCGACAATAGCTA 802 Query 42695 CGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGC 42754 || ||||| || ||||| ||| | || || || || |||||||| |||||| |||| Sbjct 803 CGCAGAGAGACTCGTAGCGTTTGCGGCAGTAGAAGGAATCTTCTTTTCGGGCAGCTTCTG 862 Query 42755 CTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 ||| ||||||||||||||| ||| || | ||||| ||||||||||||||||| ||||| Sbjct 863 CTCGATCTTCTGGCTCAAGAAGAGGGGGCTTATGCCTGGACTCACCTTCTCGAATGAACT 922 Query 42815 CATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCT 42874 |||||||| ||||| || |||| | | ||||| || | || ||| | ||||| Sbjct 923 TATCAGCAGAGACGAAGGCATGCACACACAATTTGCTTG---CTTGCTCTATAAGCACCT 979 Query 42875 CAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGA 42934 | | ||| || || ||| || || || || || || | || || | || || Sbjct 980 GAACAATAAGATTTCAAACGAGAGGATCTTGGAAATTATTACTAATGCGGTTCAAATTGA 1039 Query 42935 GAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCAT 42994 ||||||| || | || || || || || | || |||||| | ||| || Sbjct 1040 ATTGGAGTTCGTCTGCGAATCTCTTCCGGTAGAGCTAATTGGTATGAACTCTGGCCTTAT 1099 Query 42995 GTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCT 43054 | | ||||| ||||| || || ||| || || || |||| | ||| | Sbjct 1100 GAGTCTCTACATACAGTATGTTGCTGACTGGCTGTTGCAGCAATTGGGCGTTCCTCGCTT 1159 Query 43055 CTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAA 43114 |||||| | || ||||| | ||||| | ||| | ||||||||||||| Sbjct 1160 CTACAAGGTTGAGAATCCATTCGAGTGGATGGACATGATCAGTATCCAGGGCAAGACCAA 1219 Query 43115 CTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 ||| ||||||||| | |||| |||||||| Sbjct 1220 CTTCTTCGAGAAGAGGGTCGGTGACTACCA 1249 >seq3222 Length=1589 Score = 107 bits (118), Expect = 4e-18 Identities = 306/469 (65%), Gaps = 6/469 (1%) Strand=Plus/Minus Query 244676 AGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATC 244735 ||||| | | ||| ||||||||||| || || || || | |||||||| || ||| Sbjct 1567 AGGGCAATGGAGGCGAGGTTGCAGACAGCGACTTCATCGGCAGAGGTGTACTCGATGATC 1508 Query 244736 TCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTG 244795 || ||||| ||||| |||| || ||||| | || || | ||| ||| ||| Sbjct 1507 TCAGTGCACAGGTTTGAAGACTTAATAGTGCCTAAGTTTTGCTAGTTGCTTTTGCGGTTA 1448 Query 244796 CAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTG 244855 || || || |||||||||||| | || || || |||| ||| | | || | Sbjct 1447 CACGCATCTTTGTAGAGCATGTATGGGGTGCCTGTTTCGATCTGACTCTCAATGATCCAT 1388 Query 244856 TTCCAGAGGTCCCTAGCCTTGACCGTC---CTGCGAGCCTTGCCCTCTGCCTCGTAGCGG 244912 |||||| | |||||| || | ||| |||| ||| ||| ||| || | Sbjct 1387 CCCCAGAGTTACCTAGCTTTTATTGTCTTTCTGCCTCTCTTATCCTT---CTCATACTGC 1331 Query 244913 GTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG 244972 ||||| ||| |||| ||||| || | ||||| || ||| ||| Sbjct 1330 TCATACAGCTTCTCAAACTACTCACCCCATGAATCATAGAGGCCAGGACACTCATTTGGG 1271 Query 244973 CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAG 245032 ||||| ||| |||| ||||| || ||| ||||||| |||||| || || || | ||| Sbjct 1270 CACATAAGAGTCCAATCGCCATCGACCTCCACCCTCTTCATGAAAAGATCTGGCACCCAC 1211 Query 245033 AGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCC 245092 | || | ||| | || || | | || || ||| || ||||||| ||| || Sbjct 1210 AAAGCATAGAACAAATCTCTCGCACGCTATTCTTCCTTCCCGTGGTTCTTCTTCAACTGA 1151 Query 245093 AAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGG 245141 | |||||| ||| |||| ||||||||||||| | |||||| |||| || Sbjct 1150 AGGAAGTCATAGATGTCGGCGTGCCAGGGCTCAAGGTAGACGGCGAAGG 1102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943838487747680