Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq3222 154 1e-32 >seq3222 Length=1589 Score = 154 bits (170), Expect = 1e-32 Identities = 489/752 (65%), Gaps = 12/752 (2%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 || || || || |||||||| || || || ||| || |||||| |||||||||||| Sbjct 816 GCTACACCTACTCTGTTCAATGCTGGAACACCGAATCCTCAGATGAGCTCGTGTTTCCTG 875 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | |||| || || || ||||| || || | || ||| | ||| | | | Sbjct 876 CTGGACATGAAGGATGATTCAATTGAAGGAATCTTTGAGACGCTGAAGCAATGTTCCATC 935 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 || || || | || || || || ||||| | ||| | | || | | Sbjct 936 ATTTCGAAGCATGCAGGAGGTATTGGGATAGCCATGCACAGAATCAGAGCGTCTGATAGT 995 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 || || || || || ||||| ||| ||||| | || || ||| | || |||| |||| Sbjct 996 TATATTCGTGGAACAAATGGATACTCTAACGGGTTAGTGCCCATGTTGCGAGTCTACAAC 1055 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 | | | | ||||| ||||| |||||||| | || |||||||| ||||| ||||| Sbjct 1056 GATACATCAAGATACGTTGACCAAGGTGGTGGCAAAAGAAAGGGTTCCTTCGCCGTCTAC 1115 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || |||||||||||||| ||| | | | ||| | | || ||||||||||| || Sbjct 1116 CTTGAGCCCTGGCACGCCGACATCTATGACTTCCTTCAGTTGAAGAAGAACCACGGGAAG 1175 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || || | || ||||| | ||||| ||| | ||||||||||| ||||| ||||| Sbjct 1176 GAAGAATAGCGTGCGAGAGATTTGTTCTATGCTTTGTGGGTGCCAGATCTTTTCATGAAG 1235 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 | || ||| | || |||| |||| | || || ||||| ||||| || || | Sbjct 1236 AGGGTGGAGGTCGATGGCGATTGGACTCTTATGTGCCCAAATGAGTGTCCTGGCCTCTAT 1295 Query 94372 GACGTTTGTGGATCGCGT--TTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAG- 94428 || || ||| | || ||||| | |||||| | || || | ||| ||| Sbjct 1296 GA--TTCATGGGGTGAGTAGTTTGAGAAGCTGTATGAGCAGTATGA---GAAGGATAAGA 1350 Query 94429 --GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGG 94486 | ||| ||| || | |||||| | || |||| |||| | || ||| | | Sbjct 1351 GAGGCAGAAAGACAATAAAAGCTAGGTAACTCTGGGGATGGATCATTGAGAGTCAGATCG 1410 Query 94487 AGACGGGTACGCCCTACATCTTGTTCAAGGACTC-TGTCAACGCCAAGTCCAACCAGCAG 94545 | || || || || ||||| | | ||| || | ||| ||| ||| |||| |||| Sbjct 1411 AAACAGGCACCCCATACATGCTCTACAAAGATGCGTGT-AACCGCAAAAGCAACTAGCAA 1469 Query 94546 CACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCG 94605 || | || || ||| || || |||||||| ||||| ||||||| || ||| | Sbjct 1470 AACTTAGGCACTATTAAGTCTTCAAACCTGTGCACTGAGATCATCGAGTACACCTCTGCC 1529 Query 94606 GACGAGATTGCTGTGTGTAACCTGGGCTCCAT 94637 || || | ||||| || ||||| | |||||| Sbjct 1530 GATGAAGTCGCTGTCTGCAACCTCGCCTCCAT 1561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494460885391280