Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3222 93.3 4e-14 seq25823 89.7 5e-13 seq4283 89.7 5e-13 seq26408 86.0 6e-12 seq36835 84.2 2e-11 seq16860 84.2 2e-11 >seq3222 Length=1589 Score = 93.3 bits (102), Expect = 4e-14 Identities = 347/538 (64%), Gaps = 17/538 (3%) Strand=Plus/Minus Query 153596 GGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTC 153655 |||||| || || || || ||||| || || ||||| | |||||| | |||||| Sbjct 1565 GGCAATGGAGGCGAGGTTGCAGACAGCGACTTCATCGGCAGAGGTGTACTCGATGATCTC 1506 Query 153656 GGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCA 153715 | ||| ||||| | || || ||| || ||||||| ||||||||||| || || Sbjct 1505 AGTGCACAGGTTTGAAGACTTAATAGTGCCTAAGTTTTGCTAGTTGCTTTTGCGGTTACA 1446 Query 153716 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCT 153775 ||| |||||| |||||||||| || ||| || |||| || | || | ||| | | Sbjct 1445 CGCATCTTTGTAGAGCATGTATGGGGTGCCTGTTTCGATCTGACTCTCAATGATCCATCC 1386 Query 153776 ATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCC---TCGCTCTCGTATCGCTC 153832 || | | ||| | || | || | | || |||| || |||| Sbjct 1385 CCAGAGTTACCTAGCTTTTATTGTCTTTC---TGCCTCTCTTATCCTTCTCATACTGCTC 1329 Query 153833 GTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACA 153892 ||||| |||||||| || || | | || |||||| ||||||| || || || Sbjct 1328 ATACAGCTTCTCAAACTACTCACCCCATGAATCATAGAGGCCAGGACACTCATTTGGGCA 1269 Query 153893 CATCAGCGACCACATATCG---TCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCA 153949 ||| || | ||| |||| ||| | | || | |||||| ||||| |||||||| Sbjct 1268 CATAAGAGTCCA---ATCGCCATCGACCTCCACCCTCTTCATGAAAAGATCTGGCACCCA 1212 Query 153950 GAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGT-TTCAGAT 154008 | || || | | || | || | || || || | ||| || | | | |||| | Sbjct 1211 CAAAGCATAGAACAAATCTCTCG-CACGCTATTCTTCCTTCCCGTGGTTCTTCTTCAACT 1153 Query 154009 TGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTAC 154068 || | | ||||||||||||||||||||| |||| ||||||||| | || ||| || | Sbjct 1152 GAAGGAAGTCATAGATGTCGGCGTGCCAGGGCTCAAGGTAGACGGCGAAGGAACCCTTTC 1093 Query 154069 GCTT---TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGG 154123 || || || || || |||| | ||| |||| |||| |||| |||||| Sbjct 1092 TTTTGCCACCACCTTGGTCAACGTATCTTGATGTATCGTTGTAGACTCGCAACATGGG 1035 >seq25823 Length=903 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || | || || ||||| | | |||| |||||||| ||||||||||| | Sbjct 659 CCACCTCTCAGCCTCAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAC 600 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||| || || || || || | | |||| || | |||||| || || || Sbjct 599 AAGGTCCTGCCGTCTTCAAGCTGCTTTCCTGCAAAGATGAGTCTCTGTTGATCGGGGGGA 540 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || ||||| ||| ||| || | | ||| | |||||||| | ||| || Sbjct 539 ATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCAACA 480 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || |||||||| || || || || || ||||| Sbjct 479 TCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 433 >seq4283 Length=919 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || | || || ||||| | | |||| |||||||| ||||||||||| | Sbjct 261 CCACCTCTCAGCCTCAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAC 320 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||| || || || || || | | |||| || | |||||| || || || Sbjct 321 AAGGTCCTGCCGTCTTCAAGCTGCTTTCCTGCAAAGATGAGTCTCTGTTGATCGGGGGGA 380 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || ||||| ||| ||| || | | ||| | |||||||| | ||| || Sbjct 381 ATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCAACA 440 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || |||||||| || || || || || ||||| Sbjct 441 TCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 487 >seq26408 Length=477 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || | || || ||||| | | |||| |||||||| ||||||||||| | Sbjct 217 CCACCTCTCAGCCTCAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAC 158 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | || | ||||| || || || || | | |||| || | |||||| || || || Sbjct 157 AAGGTTCTGCCA-TCCTCAAGCTGCTTTCCAGCAAAGATGAGTCTCTGTTGATCGGGGGG 99 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| ||| || | | ||| | |||||||| | ||| || Sbjct 98 AATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCAAC 39 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 |||| || | || || |||||||| || || || Sbjct 38 ATCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGAC 3 >seq36835 Length=903 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || | || || ||||| | | |||| |||||||| ||||||||||| | Sbjct 659 CCACCTCTCAGCCTCAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAC 600 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | || | ||||| || || || || | | |||| || | |||||| || || || Sbjct 599 AAGGTTCTGCCA-TCCTCAAGCTGCTTTCCAGCAAAGATGAGTCTCTGTTGATCGGGGGG 541 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| ||| || | | || | ||||||| | ||| || Sbjct 540 AATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATAGTGTCGGAAGGCTCAAC 481 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || |||||||| || || || || || ||||| Sbjct 480 ATCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 433 >seq16860 Length=798 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || | || || ||||| | | |||| |||||||| ||||||||||| | Sbjct 659 CCACCTCTCAGCCTCAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAC 600 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | || | ||||| || || || || | | |||| || | |||||| || || || Sbjct 599 AAGGTTCTGCCA-TCCTCAAGCTGCTTTCCAGCAAAGATGAGTCTCTGTTGATCGGGGGG 541 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| ||| || | | || | ||||||| | ||| || Sbjct 540 AATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATAGTGTCGGAAGGCTCAAC 481 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || |||||||| || || || || || ||||| Sbjct 480 ATCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495999269268960