Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3222 116 5e-21 >seq3222 Length=1589 Score = 116 bits (128), Expect = 5e-21 Identities = 502/785 (64%), Gaps = 19/785 (2%) Strand=Plus/Minus Query 116413 TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 116472 ||||| ||| |||||||| || || || || || || |||| | ||||| | Sbjct 1582 TTGACGAACTGGGGAAGGGCAATGGAGGCGAGGTTGCAGACAGCGACTTCATCGGCAGAG 1523 Query 116473 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 116532 |||||||| || || || || |||| |||||| |||||| ||||| ||||| | | | Sbjct 1522 GTGTACTCGATGATCTCAGTGCACAGGTTTGAAGACTTAATAGTGCCTAAGTTTTGCT-A 1464 Query 116533 TTTGACTTTGTG-TTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTG 116591 ||| |||| | ||||||||||| ||||||||||| ||||| || || || || | | Sbjct 1463 GTTGCTTTTGCGGTTACACGCATCTTTGTAGAGCATGTATGGGGTGCCTGTTTCGATCT- 1405 Query 116592 GGACTTGAGAATAGCCTTCCATACATCGGCGGCTGGC--ACAGTGGCGT--TGGCTCGCC 116647 |||| | | || ||| || | || || | || | | || ||| | Sbjct 1404 -GACTCTCAATGATCCATCC--CCAGAGTTACCTAGCTTTTATTGTCTTTCTGCCTCTCT 1348 Query 116648 CCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCC 116707 |||| ||| |||| || || |||||||| |||||| | || |||| | Sbjct 1347 TATCCTTCTCATACTGCTCATACAGCTTCTCAAACTACTCACCCCATGAATCATAGAGGC 1288 Query 116708 CTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGA 116767 | || || || ||| || | |||| ||| | ||| | |||| |||| |||||||| Sbjct 1287 CAGGACACTCATTTGGGCACATAAGAGTCCAATCGCCATCGACCTCCACCCTCTTCATGA 1228 Query 116768 AGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCT 116827 | || ||||| | ||| | || |||| | ||| | || |||||| | ||| | Sbjct 1227 AAAGATCTGGCACCCACAAAGCATAGAACAAATCTCTCGCACGCTATTCTTCCTTCCCGT 1168 Query 116828 GATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCG 116887 | || ||||| | ||||| ||| || |||||||| || || ||||| || | Sbjct 1167 GGTTCTTCTTCAACTGAAGGAAGTCATAGATGTCGGCGTGCCAGGGCTCAAGGTAGACGG 1108 Query 116888 CGATTGACCCCTTGC---GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATA 116944 ||| || ||||| | | |||| | |||| || || || | || |||| | | Sbjct 1107 CGAAGGAACCCTTTCTTTTGCCACCACCTTGGTCAACGTATCTTGATGTATCGTTGTAGA 1048 Query 116945 CGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGT 117004 | || | ||| || | | || | ||| | |||||||| || |||||| | | Sbjct 1047 CTCGCAACATGGGCACTAACCCGTTAGAGTATCCATTTGTTCCACGAATATAACTATCAG 988 Query 117005 TGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGC 117064 ||||||| ||| ||| || |||||||| ||||| ||| || || | | Sbjct 987 ACGCTCTGATTCTGTGCATGGCTATCCCAATACCTCCTGCATGCTTCGAAATGATGGAAC 928 Query 117065 ACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC 117124 | | | | || | | |||| || || || || ||| |||| | | | ||||| | Sbjct 927 ATTGCTTCAGCGTCTCAAAGATTCCTTCAATTGAATCATCCTTCATGTCCAGCAGGAAAC 868 Query 117125 ---AGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGA 117181 |||| ||| || || | ||||| ||||| ||||| || || ||||| || || Sbjct 867 ACGAGCT---CATCTGAGGATTCGGTGTTCCAGCATTGAACAGAGTAGGTGTAGCATGTG 811 Query 117182 TGAAC 117186 ||||| Sbjct 810 TGAAC 806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613181903144880