Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq32716 127 2e-23 seq19111 127 2e-23 seq33948 105 5e-17 seq13023 104 2e-16 seq29885 102 6e-16 >seq32716 Length=2259 Score = 127 bits (140), Expect = 2e-23 Identities = 212/304 (70%), Gaps = 7/304 (2%) Strand=Plus/Minus Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086 ||||| ||||| |||||||| | |||| ||| | || || |||| || | ||| Sbjct 938 TCAAAGTCTTCTCCTCCCAAATGGGTATCTCCGGCAGTTGCGACGACTTCAAACACTCCG 879 Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146 | || | | || |||| || || ||| || || |||| ||| || | | ||| Sbjct 878 TTATCGATGGTCAGGAGAGACACGTCGAAGGTACCTCCTCCCAAATCGAACACGATCACA 819 Query 518147 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 518206 ||| | || |||| || ||||| | ||| || |||| |||||||||||||| ||| Sbjct 818 TTCTTCTCAC---CTTGTTTCTTATCCATACCGTAGGCAATTGCAGCAGCAGTTGGCTCA 762 Query 518207 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 518266 || || || || | |||| || |||| ||| ||| ||||| ||||| ||||| | | Sbjct 761 TTGATGATCCTGAGTACATCCAGGCCAGAAATGAGTCCAGCATCCTTAGTAGCTTGGCGT 702 Query 518267 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTT--ACTTCTTTACCAA 518324 || | |||||| || || ||||| |||||||| || |||| ||| |||||| | |||| Sbjct 701 TGGGCATCGTTGAAGTAAGCAGGCACAGTAATGACTGCAT--GTTGCACTTCTCTGCCAA 644 Query 518325 TATA 518328 ||| Sbjct 643 GATA 640 >seq19111 Length=2178 Score = 127 bits (140), Expect = 2e-23 Identities = 729/1155 (63%), Gaps = 20/1155 (2%) Strand=Plus/Minus Query 517162 AGCTTCTCTAATCATTCTCTCAATTTGATCTT--CAGAGAATCTTCCGCGATTATTAGTA 517219 |||||| | | |||||||||||||| || | | ||| | ||| | |||||| Sbjct 1701 AGCTTCATTGACCATTCTCTCAATTTCGTCCTTGCTCAGA--CGTCCCTTCTCATTAGTG 1644 Query 517220 ATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCA 517279 ||||| || || || || ||| || ||| ||||| |||| |||||| | || || Sbjct 1643 ATAGTGATCTTATTAGACTTGCCAGTGCCTTTGTCAGCAGCAGACACATTCATGATTCCG 1584 Query 517280 TTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATC 517339 |||||||| | ||| || |||||||| || || || || ||||| ||||||| || || Sbjct 1583 TTGGCATCAATATCGAAAGTGACTTCGATCTGGGGAACACCTCTGGGAGCAGGGGGAATA 1524 Query 517340 CCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCG 517399 |||||||| || ||| |||| || | | || || || || | ||| || || || Sbjct 1523 CCTTCCAAGTTGAATTTTCCAAGCATGTGGTTGTCCTTGGTCATGCTTCTCTCGCCTTCA 1464 Query 517400 AAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTT 517459 | | | ||| || | | || || || | || || || || | ||| | | || Sbjct 1463 TAGACCTAGATGAGCACACCTGGCTGGTTGTCAGCGTAGGTAGTGAAGA-TCTAGCTCTT 1405 Query 517460 TTACAAGGA-ATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTC 517518 | | || || || ||||| | || | ||||| | ||||| || || || Sbjct 1404 CTTCGTGGGGATGGTGGTGTTACGTGGGATGAGCACAGTCATGACTCCACCAGCAGTCTC 1345 Query 517519 TAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGT 517578 | || || |||||||| | || || | |||| | | | | |||| ||| Sbjct 1344 AATTCCGAGGGAAAGAGGGGCAACGTCGAGGAGGAGCAGGTCCTTCACGTTTTGGTCACC 1285 Query 517579 TTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATT 517638 | |||| || || || ||||| | |||||||| || || ||||| ||||| || || Sbjct 1284 CTCACCAGTCAGGATGGCAGCTTGCACGGCAGCACCGTAAGCCACAGCCTCATCTGGGTT 1225 Query 517639 AACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGG 517698 | | | || || | || |||||||| || | | || | ||| | |||||| Sbjct 1224 GATTGATCTGTTCAGAGTCTTGCCATTGAAGAAGTCAGTCAGCATTTGCTGGATCTTAGG 1165 Query 517699 AATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGA 517758 || | | || || || || | |||| ||| || | || ||| | ||| ||| Sbjct 1164 GATTCTTGTGGAACCACCGACAAGCACAACTTCGTGAATTTGACCTTTGGCAAGTCCTGA 1105 Query 517759 ATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTC--TGAACAAAGT 517816 ||| | || ||||| ||||| | | | ||| |||||||| || ||| | Sbjct 1104 GTCCTTGAGCACGTTTTCGACGGGAGGCATGCACTTTCTGAACAAGTCCATGTTCAA--T 1047 Query 517817 TCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCA 517876 |||||||| |||||||| | | ||| || | || || || || | || Sbjct 1046 TCTTCGAACTTAGCTCTTGAGATGTTGATGTTGAAGTCCTCACCCTCAGCCAGGGTCTCG 987 Query 517877 ACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTC 517936 ||||| | || |||| | || ||| || | || || || || || Sbjct 986 CACTCAATAGGAGCTTGATGGGCAGCAGAGAGAATTCTCTTTGCCTTCTCGCACTGGGTT 927 Query 517937 CTTAGTCTTC--GTAAGGCTTT-TGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTG 517993 || ||||||| ||| ||| | || | ||| | | || || | | || ||||| Sbjct 926 CTCAGTCTTCTGGTA--GCTCTCTGGTTCTTGGTA-ATGTCGATTCCAGACTTCTTCTTG 870 Query 517994 AAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTA 518053 || || | | || | ||||| | ||||| || || ||||| ||||| | || Sbjct 869 AATTCAGCTATGCAGTACTCGACAAGTCTGTTATCGAAGTCCTCACCACCCAAATGGGTG 810 Query 518054 TTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCA 518113 | ||| || || | |||| || | || ||||||| || | ||| | ||||| Sbjct 809 TGTCCATTAGTTGCCTTCACTTCAAAGATACCCTCTTCAATAGTGAGCAGACTAACATCG 750 Query 518114 TGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGG--TTTTTAT 518171 || ||||| |||| ||| || || || || ||| | |||| || || || || | Sbjct 749 AAAGTGCCACCTCCCAAATCGAAGATGAGAACGTTCTTCTCTTG--CTGGGACTTCTTGT 692 Query 518172 CAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGAC 518231 |||| || || |||| |||||||||||||| || || || ||||| | ||||| | | Sbjct 691 CAAGTCCGTATGCAATGGCAGCAGCAGTTGGCTCGTTGATGATTCTGAGCACATTCAAGC 632 Query 518232 CAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAA 518291 | ||||| ||| || || || || || ||||| || ||| || || || || || | Sbjct 631 CTGCAATAGCTCCAGCGTCCTTGGTTGCCTGTCTCTGGCTATCATTGAAGTAGGCTGGCA 572 Query 518292 CAGTAATAACGGCAT 518306 |||| | ||| |||| Sbjct 571 CAGTGACAACTGCAT 557 >seq33948 Length=1889 Score = 105 bits (116), Expect = 5e-17 Identities = 139/188 (74%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || ||||| || | || | |||||||||||| || ||||||||||||||| ||| | Sbjct 1477 TTGTCAAGTCCGAAAGCCAGAGCAGCAGCAGTAGGCTCATTAATAATTCTCTTAACTTCC 1536 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 | | ||||| |||| ||||| ||||| |||||||| |||| ||| || || || ||| Sbjct 1537 AAATTTGCAATCTTTCCAGCATCCTTAGTAGCTTGTCTCTGTGCATCATTGAAGTAGGCA 1596 Query 518288 GGAACAGTAATAACGGCATCAGT--TACTTCTTTACCAATATAAGCGCT-TGCCGTTTGT 518344 || ||||| ||||| || || | || ||| | |||| || ||| || ||| |||| Sbjct 1597 GGGACAGTGATAACAGCCTCTTTAATATTTCCT--CCAAGAT-AGCTCTCTGCAGTTTCC 1653 Query 518345 TTCATTTT 518352 ||||| || Sbjct 1654 TTCATCTT 1661 Score = 91.5 bits (100), Expect = 1e-12 Identities = 267/403 (66%), Gaps = 20/403 (5%) Strand=Plus/Plus Query 517244 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 517303 |||||||| || |||| ||| || | |||||||| ||||| | ||| || |||||| Sbjct 562 GTTGATTTGTCTTTTGCAGACACGTTCATGATACCATTAGCATCAATATCGAAAGTGACT 621 Query 517304 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGT-TCCCAG 517362 || ||||| ||| ||||| |||| ||||| ||| |||| || | | ||| || Sbjct 622 TCGATTTGTGGGTGGCCTCTTGGAGCCATGGGGATACCT-CCAAGTTCGAACTCTCCAAG 680 Query 517363 ATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGT 517422 | || ||||| || | | || ||||||| ||| | | ||| |||| || Sbjct 681 AACCTTGTTATCGGCAGCCATCTCTCTCTCACCCTGGAAGACCTTGATGCTAACCTTGGT 740 Query 517423 TTGATTATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTC 517481 || || || | | ||||| || || ||| | || || || || || ||||||| Sbjct 741 CTGGTTGTCAGCAGCAGTTGAGAAGAC-CTGACTCTTCTTGGTCGGGATGGTAGTGTTTC 799 Query 517482 TATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGA 517541 | | || | || ||||| | ||| || || || | ||| ||||| || || || | Sbjct 800 TTTGGATCAACTTAGTCATCACACCTCCAAGGGTCTCAATACCCAGAGACAGTGGGGTAA 859 Query 517542 CATCAACTAGGACAATAT-TTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCT 517600 |||| | || | ||||| ||||| |||| |||| ||| | || | Sbjct 860 CATCCAACAGCAAAATATCTTTGAC----TTCACCAGT---------AAGGACTGCACCC 906 Query 517601 TGAATAGCAGCACC-ATATGCAACAGCTTCATCAGGATTAACA 517642 |||| ||||||||| ||| || |||||||||||||| |||||| Sbjct 907 TGAACAGCAGCACCGATA-GCTACAGCTTCATCAGGGTTAACA 948 Score = 87.8 bits (96), Expect = 1e-11 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 322244 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 322303 ||| | || ||||| || ||||| || |||||||| ||| | ||| || ||| ||| Sbjct 1486 CCGAAAGCCAGAGCAGCAGCAGTAGGCTCATTAATAATTCTCTTAACTTCCAAATTTGCA 1545 Query 322304 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 322363 || || ||| ||| ||| |||||||||||||| ||||| || || || || ||||| Sbjct 1546 ATCTTTCCAGCATCCTTAGTAGCTTGTCTCTGTGCATCATTGAAGTAGGCAGGGACAGTG 1605 Query 322364 ATAACTGCTTTATTAATA 322381 ||||| || | |||||| Sbjct 1606 ATAACAGCCTCTTTAATA 1623 >seq13023 Length=2091 Score = 104 bits (114), Expect = 2e-16 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 518160 CTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCA 518219 |||| || || || || || || |||| ||||||||||||||| ||||| || || |||| Sbjct 1383 CTTGTTTCTTGTCTAGTCCGTAGGCAATAGCAGCAGCAGTTGGCTCATTGATTATCCTCA 1442 Query 518220 AAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAA 518279 || | || |||||||| ||||||||||| || || || ||||||| |||||| | Sbjct 1443 GTACTTCCAGGCCAGCAATCTGCCCTGCATCTTTCGTTGCCTGCCTTTGTGCATCGTTGA 1502 Query 518280 AATATGCAGGAACAGTAATAACGGCAT 518306 | || || || || || || || |||| Sbjct 1503 AGTAAGCTGGGACTGTGATTACTGCAT 1529 >seq29885 Length=2322 Score = 102 bits (112), Expect = 6e-16 Identities = 138/188 (73%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || ||||| || | || | |||||| ||||| || ||||||||||||||| ||| | Sbjct 1477 TTGTCAAGTCCGAAAGCCAGAGCAGCGGCAGTAGGCTCATTAATAATTCTCTTAACTTCC 1536 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 | | ||||| |||| ||||| ||||| |||||||| |||| |||||| || || ||| Sbjct 1537 AAATTTGCAATCTTTCCAGCATCCTTAGTAGCTTGTCTCTGTGCATCGTTGAAGTAGGCA 1596 Query 518288 GGAACAGTAATAACGGCATCAGT--TACTTCTTTACCAATATAAGCGCT-TGCCGTTTGT 518344 || ||||| || || || || | || ||| | |||| || ||| || ||| |||| Sbjct 1597 GGGACAGTGATGACAGCCTCTTTAATATTTCCT--CCAAGAT-AGCTCTCTGCAGTTTCC 1653 Query 518345 TTCATTTT 518352 ||||| || Sbjct 1654 TTCATCTT 1661 Score = 89.7 bits (98), Expect = 4e-12 Identities = 267/404 (66%), Gaps = 20/404 (5%) Strand=Plus/Plus Query 517243 TGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGAC 517302 |||||| || || |||| ||| || | |||||||| ||||| | ||| || ||||| Sbjct 561 TGTTGACTTGTCCTTTGCAGACACGTTCATGATACCATTTGCATCAATATCGAAAGTGAC 620 Query 517303 TTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGT-TCCCA 517361 ||| ||||| ||| ||||| |||| ||||| ||| |||| || | | ||| | Sbjct 621 TTCGATTTGTGGGTGGCCTCTTGGAGCCATAGGGATACCT-CCAAGTTCGAACTCTCCAA 679 Query 517362 GATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAG 517421 || || ||||| || | | || ||||||| ||| | | ||| |||| | Sbjct 680 GAACCTTGTTATCGGCAGCCATCTCTCTCTCACCCTGGAAGACCTTGATGCTAACCTTGG 739 Query 517422 TTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTT 517480 | || || || | | ||||| || || ||| | || || || || || |||||| Sbjct 740 TCTGGTTGTCAGCAGCAGTTGAGAAGAC-CTGACTCTTCTTGGTGGGGATGGTAGTGTTT 798 Query 517481 CTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTG 517540 || | || | || ||||| | ||| || || || | ||| ||||| || || || Sbjct 799 CTTTGGATCAACTTAGTCATCACACCTCCAAGGGTCTCGATACCCAGAGACAGTGGGGTT 858 Query 517541 ACATCAACTAGGACAATAT-TTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGC 517599 ||||| | || | ||||| ||||| |||| |||| ||| | || | Sbjct 859 ACATCCAAAAGCAAAATATCTTTGAC----TTCACCAGT---------AAGGACTGCACC 905 Query 517600 TTGAATAGCAGCACC-ATATGCAACAGCTTCATCAGGATTAACA 517642 |||| ||||||||| ||| || |||||||||||||| |||||| Sbjct 906 CTGAACAGCAGCACCGATA-GCTACAGCTTCATCAGGGTTAACA 948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3778717479115108