Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3222 154 2e-32 >seq3222 Length=1589 Score = 154 bits (170), Expect = 2e-32 Identities = 563/868 (65%), Gaps = 15/868 (2%) Strand=Plus/Minus Query 106445 TTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCT 106504 ||||| ||| |||||||| || || || | ||||| ||||| ||||| | Sbjct 1582 TTGACGAACTGGGGAAGGGCAATGGAGGCGAGGTTGCAGACAGCGACTTCATCGGCAGAG 1523 Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 106564 |||||||| | || || || |||| ||| ||| |||||| || || || || | | | Sbjct 1522 GTGTACTCGATGATCTCAGTGCACAGGTTTGAAGACTTAATAGTGCCTAAGTTTTGCTAG 1463 Query 106565 TTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 106624 || || || ||| |||||||| |||||||||||||| || || || || || |||| Sbjct 1462 TTGCTTTTGCGGTTACACGCATCTTTGTAGAGCATGTATGGGGTGCCTGTTTCGATCTGA 1403 Query 106625 GACTTGAGAATTGCCTTCCACACATCGGCG--GCTGGTACAATGGCGTTG-GCCCGTCCC 106681 || | || || ||| || | | ||| || || | || ||| || Sbjct 1402 CTCTCAATGAT--CCATCCCCAGAGTTACCTAGCTTTTAT--TGTCTTTCTGCCTCTCTT 1347 Query 106682 -TCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACC 106740 ||| ||| |||| || || ||||||| ||||||| | || |||| || Sbjct 1346 ATCCTTCTCATACTGCTCATACAGCTTCTCAAACTACTCACCCCATGAATCATAGAGGCC 1287 Query 106741 TGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 106800 || || | ||| || | ||||| ||| | ||| | |||| |||| ||||||||| Sbjct 1286 AGGACACTCATTTGGGCACATAAGAGTCCAATCGCCATCGACCTCCACCCTCTTCATGAA 1227 Query 106801 AAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTG 106860 ||| ||||| | ||||| | | || | |||||| || ||||| | || || Sbjct 1226 AAGATCTGGCACCCACAAAGCATAGAACAAATCTCTCGCACGCTATTCTTCCTTCCCGTG 1167 Query 106861 GTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTG 106919 ||| || | |||| |||||| || ||| || |||||||| |||||||| ||||| | Sbjct 1166 GTTCT-TCTTCAACTGAAGGAAGTCATAGATGTCGGCGTGCCAGGGCTCAAGGTAGACGG 1108 Query 106920 CGATAGATCCCTTTCGAC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATA 106976 ||| || ||||||| ||| || |||| | || || | | ||| |||| | | Sbjct 1107 CGAAGGAACCCTTTCTTTTGCCACCACCTTGGTCAACGTATCTTGATGTATCGTTGTAGA 1048 Query 106977 CGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTAT 107036 | || | ||| || | | || | || | |||||||| || |||||| | | | Sbjct 1047 CTCGCAACATGGGCACTAACCCGTTAGAGTATCCATTTGTTCCACGAATATAACTATCAG 988 Query 107037 TGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCAC 107096 ||||| | || ||| ||||||||||| || || ||| || || | || Sbjct 987 ACGCTCTGATTCTGTGCATGGCTATCCCAATACCTCCTGCATGCTTCGAAATGATGGAAC 928 Query 107097 ACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGC 107156 | | | | || || || |||| || | ||||| || ||||| || | | ||||| | Sbjct 927 ATTGCTTCAGCGTCTCAAAGATTCCTTCAATTGAATCATCCTTCATGTCCAGCAGGAAAC 868 Query 107157 AACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGA 107216 | | |||||| || | ||||| ||||||||||| || || ||||| || || ||| Sbjct 867 ACGAGCTCATCTGAGGATTCGGTGTTCCAGCATTGAACAGAGTAGGTGTAGCATGTGTGA 808 Query 107217 ACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGG 107275 || |||| | |||| || ||||| || || ||| || | || || ||| Sbjct 807 AC-CACCTCTCTCCCATCAAATCATATGTTTCAAAAGCAGCCTCCAGATCGTCTAAATGG 749 Query 107276 ATGCCGATGGCCACACGCATAAACATGT 107303 || || || ||||||||| ||||||| Sbjct 748 ATTCCAATACTCACACGCATTAACATGT 721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589667977430320