Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq16969 93.3 5e-14 >seq16969 Length=3315 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/212 (71%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 153241 CAGTCATACAGCGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATC 153300 ||||||| | |||| ||||||||||| || | ||||||||| | ||||| || || | Sbjct 608 CAGTCATCAGGAGAAATGTTCTTGAGAACCCAAATTGGTACACTCCATACACACCTTACC 667 Query 153301 AAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAG 153360 | || ||||| | ||||| | ||||| | || |||| | ||| || | || ||| Sbjct 668 AGGCAGAGATTGCATAGGGACGTTTGGAGTCGTTGCTCAACTTCCAGACTATGGTCTCAG 727 Query 153361 AACTTACAGGATTACCAATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAG 153420 |||| || || || ||| | ||||| |||| | || || | ||||| ||| ||| Sbjct 728 AACTCACTGGCTTCGAAATGTCTAACGCTAGTCTACTTGACGAGTCTACTGCTGCATCAG 787 Query 153421 AAGCAATGCT-ATTAGCATATAAT-TCTACAA 153450 |||||||| | || || |||||| || |||| Sbjct 788 AAGCAATGATGATGAG-TTATAATGTCCACAA 818 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 154950 GGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCA 155009 |||||||| ||||| | ||||||||||| || || |||||| | || ||| || || Sbjct 2377 GGTGGTCAAGTATACATGGATGGAGCAAACCTTAACGCACAGATGGGTCTAACATCCCCC 2436 Query 155010 TGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACAT 155069 | |||||| ||||| |||| | ||| ||||||| ||||||| ||||| || Sbjct 2437 GGATTCATTGGTGCCGATGTTGGTCACTTGAACCTACATAAGACATTCTCAATTCCCCAC 2496 Query 155070 GGAGGTGGAGGTCCTGG 155086 |||||||| ||||| || Sbjct 2497 GGAGGTGGTGGTCCAGG 2513 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 153889 ATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAA 153948 |||| || ||| | | || || ||||||||||||||||| ||| | || || ||||| | Sbjct 1256 ATAAGGCCTACCGCATGGCTCTGCAGACTAGAGAGCAGCACATCCGTAGGGAGAAAGCGA 1315 Query 153949 CCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATG 154002 | || || || || || || ||||||||||||| ||||| |||| || |||| Sbjct 1316 CGAGCAATATTTGTACTGCATAGGCACTGCTGGCAAATATTTCTGCCTTTTATG 1369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578905686893120