Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3222 143 3e-29 seq25860 107 2e-18 >seq3222 Length=1589 Score = 143 bits (158), Expect = 3e-29 Identities = 545/849 (64%), Gaps = 6/849 (1%) Strand=Plus/Minus Query 47876 AAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTAT 47935 ||| || || || || || || || ||||| || |||| | | || || | || || Sbjct 1568 AAGGGCAATGGAGGCGAGGTTGCAGACAGCGACTTCATCGGCAGAGGTGTACTCGATGAT 1509 Query 47936 TTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTT 47995 |||| || || || | | || ||||| || || ||||| | || | ||| Sbjct 1508 CTCAGTGCACAGGTTTGAAGACTTAATAGTGCCTAAGTTTTGCTAGTTGCTTTTGCGGTT 1449 Query 47996 ACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGA 48055 ||| || || ||||| ||||| | || || || ||||| |||||| |||||||| | Sbjct 1448 ACACGCATCTTTGTAGAGCATGTATGGGGTGCCTGTTTCGATCTGACTCTCAATGATCCA 1389 Query 48056 TTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGT 48115 | ||| | |||||| ||||| ||| || | ||||| | || || | Sbjct 1388 TCCCCAGAGTTACCTAGCTTTTATTGTCTTTCTGCCTCTCTTATCCTTCTCATACTGCTC 1329 Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACA 48175 ||| | ||||||||| | || || | || || | |||||||| ||||| || || Sbjct 1328 ATACAGCTTCTCAAACTACTCACCCCATGAATCATAGAGGCCAGGACACTCATTTGGGCA 1269 Query 48176 CATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAG 48235 ||| | | |||||| |||| | || || |||| || | |||||| | ||| | Sbjct 1268 CATAAGAGTCCAATCGCCATCGACCTCCACCCTCTTCATGAAAAGATCTGGCACCCACAA 1209 Query 48236 AGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAA 48294 ||| ||| || ||||| || | | |||||| || || ||| | || | | || Sbjct 1208 AGC-ATAGAACAAATCTCTCGCACGCTATTCTTCCTTCCCGTGGTTCTTCTTCAACTGAA 1150 Query 48295 GAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTT 48354 | ||||| || || || ||||| || || | || | || | ||| || || Sbjct 1149 GGAAGTCATAGATGTCGGCGTGCCAGGGCTCAAGGTAGACGGCGAAGGAACCCTTTCTTT 1090 Query 48355 TATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAA 48414 | ||| ||||| || | ||||| | |||| ||| || |||| ||||| || || | Sbjct 1089 TGCCACCACCTTGGTCAACGTATCTTGATGTATCGTTGTAGACTCGCAACATGGGCACTA 1030 Query 48415 TACCATTTGA-TATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTA 48473 || || || ||| ||||| ||||| ||||||||| || ||||| || | Sbjct 1029 ACCCGTTAGAGTAT-CCATTTGTTCCACGAATATAACTATCAGACGCTCTGATTCTGTGC 971 Query 48474 ATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCA 48533 || | || || ||||| ||||| || || || | | ||| | || || || ||| Sbjct 970 ATGGCTATCCCAATACCTCCTGCATGCTTCGAAATGATGGAACATTGCTTCAGCGTCTCA 911 Query 48534 TAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGA-CATTTGCGG 48592 | |||||||| || |||||| |||| | | || ||||| | || ||| || || Sbjct 910 AAGATTCCTTCAATTGAATCATCCTTCATGTCCAGCAGGAAACA-CGAGCTCATCTGAGG 852 Query 48593 ATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAA 48652 || ||||| | ||| || | || || | ||||| | ||||| ||||| | Sbjct 851 ATTCGGTGTTCCAGCATTGAACAGAGTAGGTGTAGCATGTGTGAACCACCTCTCTCCCAT 792 Query 48653 CAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACG 48712 ||| | ||||||||||| | ||| || | ||| | ||| || || ||| ||||| Sbjct 791 CAAATCATATGTTTCAAAAGCAGCCTCCAGATCGTCTAAATGGATTCCAATACTCACACG 732 Query 48713 CATTAACAT 48721 ||||||||| Sbjct 731 CATTAACAT 723 >seq25860 Length=1350 Score = 107 bits (118), Expect = 2e-18 Identities = 382/594 (64%), Gaps = 5/594 (1%) Strand=Plus/Minus Query 18982 CCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttt 19041 || |||||||| || || | |||||| || || || | |||||||| || || || || Sbjct 940 CCTTCGTCTCTGCTGATAAGTTCATTCGAGAAGGTGAGTCCAGGCATAAGCCCCCTCTTC 881 Query 19042 tttAACCAGAATATAGAAGCAAATGAT-CCAGAAAAGAATATACCTTCTACTGCTGCAAA 19100 || | |||||| || || ||| | | | || |||||||| || ||||||||||| ||||| Sbjct 880 TTGAGCCAGAAGATCGA-GCAGAAGCTGCCCGAAAAGAAGATTCCTTCTACTGCCGCAAA 822 Query 19101 AGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATC 19160 || || ||||| ||| | || ||| || | ||||| ||| ||||| || Sbjct 821 CGCTACGAGTCTCTCTGCGTAGCTATTGTCGGAGCT---GATCCAACGCAGGGCCCAGTC 765 Query 19161 AGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATC 19220 ||||||||| || || || || | ||| | | || || || | ||| | Sbjct 764 AGCCTTCTTCTTCACGACGGGGATGTTGTCTGTGGCTTTGAAGAGGAAGTCTTTCTCGTT 705 Query 19221 TGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTAT 19280 | || || | || | || || | | ||| | || || || || ||||| || Sbjct 704 TTGGTCGTTGATGTAGGTGTCGATTAGCAGGGAGTAGGTCTCAGAGTGGATGTTTTCCAT 645 Query 19281 AGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCT 19340 ||||| || ||||| || || | ||||| | | ||| | || | || ||||| Sbjct 644 CATCATCTAGAAGCCGTAGAAGCACCGCGCTTCAGGCACCTGGATCTCGGTGCAGAATCT 585 Query 19341 TTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTT 19400 |||| || ||| ||| || || || || || || || |||| || | || Sbjct 584 CATAGCCAAGTTCTCAAGAACGATGCCGTCTGATGCGGCGAAGAAGGCTAGCACGTACTT 525 Query 19401 AATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATC 19460 || || ||| | || | ||| | | | | |||||| || | || | || ||||| Sbjct 524 GATGAAGTGTCTCTCGTTGTCGGTGAGTCTCTCCCAATCTTTGAGGTCCTGAGCCAAATC 465 Query 19461 TACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACG 19520 | |||||| | ||||| || | || | | ||| ||||| ||||| |||||| Sbjct 464 GATTTCTTCGGCAGTCCAGAAGCATGCAACCTGATCTTTGTACATCTTCCAGATATCATT 405 Query 19521 ATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATAGGTTC 19574 || | || || | || ||||||||||| ||||||| ||||| ||| || Sbjct 404 GTACTTAATGGGTAGGATGACAAATCTATTAGGGTTTTCTTCAAGAAGAGGCTC 351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561810755861520