Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq16969 98.7 1e-15 >seq16969 Length=3315 Score = 98.7 bits (108), Expect = 1e-15 Identities = 185/262 (71%), Gaps = 9/262 (3%) Strand=Plus/Minus Query 139791 GTTTGTGGGAATATAT-CTT-GAT-CAACTATTACA-GTCT-TCTTATCTCTTGTAGA-A 139844 ||||||||||| |||| ||| ||| ||| | ||| |||| |||| || |||| || | Sbjct 866 GTTTGTGGGAAGATATGCTTCGATACAA--AGTACTTGTCTCTCTT-TCCATTGTGGACA 810 Query 139845 TTATATGCTAACAGCATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTT 139904 ||||| | || |||||| |||| ||| ||||| | || || | |||| ||||| Sbjct 809 TTATAACTCATCATCATTGCTTCTGATGCAGCAGTAGACTCGTCAAGTAGACTAGCGTTA 750 Query 139905 GCTATTGGTAATCCTGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAAT 139964 | ||| || || || ||||||| || | || ||| | |||| || | ||||| Sbjct 749 GACATTTCGAAGCCAGTGAGTTCTGAGACCATAGTCTGGAAGTTGAGCAACGACTCCAAA 690 Query 139965 CTTCCCTGAGATATCTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCA 140024 | ||||| | ||||| || || || || ||||| | ||||||||| | || |||||| Sbjct 689 CGTCCCTATGCAATCTCTGCCTGGTAAGGTGTGTATGGAGTGTACCAATTTGGGTTCTCA 630 Query 140025 AGAACGTTTCGCTGTATGACTG 140046 ||||| |||| | ||||||| Sbjct 629 AGAACATTTCTCCTGATGACTG 608 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 138201 CCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGTAAATTTAGATGACATACA 138260 || ||||| |||||||| || ||||| ||||||||||||||| || | |||| ||| Sbjct 2513 CCTGGACCACCACCTCCGTGGGGAATTGAGAATGTCTTATGTAGGTTCAAGTGACCAACA 2454 Query 138261 TCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCG 138320 || |||||| | | || || |||||| | |||||| || || ||||| ||||| Sbjct 2453 TCGGCACCAATGAATCCGGGGGATGTTAGACCCATCTGTGCGTTAAGGTTTGCTCCATCC 2394 Query 138321 AGATATACCTGACCACC 138337 | ||||| |||||||| Sbjct 2393 ATGTATACTTGACCACC 2377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578691400573360