Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3222 136 5e-27 >seq3222 Length=1589 Score = 136 bits (150), Expect = 5e-27 Identities = 558/871 (64%), Gaps = 13/871 (1%) Strand=Plus/Plus Query 75215 CAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTCTTG 75274 ||| ||||||| ||||| || || || ||||| || || | || ||| || Sbjct 717 CAGCACATGTTAATGCGTGTGAGTATTGGAATCCATTTAGACGATCTGGAGGCTGCTTTT 776 Query 75275 GAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTTCAA 75333 || ||||| || |||| | |||| ||||| || || ||||| || || ||||| Sbjct 777 GAAACATATGATTTGATGGGAGAGAGGTG-GTTCACACATGCTACACCTACTCTGTTCAA 835 Query 75334 TGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTC 75393 |||||| ||||| | || |||||| | || ||||| | | || ||||| || || Sbjct 836 TGCTGGAACACCGAATCCTCAGATGAGCTCGTGTTTCCTGCTGGACATGAAGGATGATTC 895 Query 75394 AATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGG 75453 ||| | || |||| || || || | | | ||| | || || ||| || || || Sbjct 896 AATTGAAGGAATCTTTGAGACGCTGAAGCAATGTTCCATCATTTCGAAGCATGCAGGAGG 955 Query 75454 TATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGG 75513 ||||||||| ||| || | ||||| | | | |||||| || |||||||| Sbjct 956 TATTGGGATAGCCATGCACAGAATCAGAGCGTCTGATAGTTATATTCGTGGAACAAATGG 1015 Query 75514 TCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAA 75573 | || | || | | || ||| | || || | |||| ||| | | || || | Sbjct 1016 ATACTCTAACGGGTTAGTGCCCATGTTGCGAGTCTACAACGATACATCAAGATACGTTGA 1075 Query 75574 TCAAGCGGGGCGTC----GCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCG 75629 |||| | || | | | ||||| ||| |||| |||||| | || || ||||| |||| Sbjct 1076 CCAAG-GTGGTGGCAAAAGAAAGGGTTCCTTCGCCGTCTACCTTGAGCCCTGGCACGCCG 1134 Query 75630 ATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGA 75688 | ||| || |||||| |||| | || ||||| || | ||||| || ||| Sbjct 1135 ACATCTATGACTTCCTTCAGTTGAAGA-AGAACCACGGGAAGGAAGAATAGCGTGCGAGA 1193 Query 75689 GATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGT 75748 ||| | || | | ||||| | ||||| |||||||||||| |||| |||| | ||| Sbjct 1194 GATTTGTTCTATGCTTTGTGGGTGCCAGATCTTTTCATGAAGAGGGTGGAGGTCGATGGC 1253 Query 75749 CAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAG 75808 | ||| ||||| | || ||| | || || || |||| || | ||||||| || Sbjct 1254 GATTGGACTCTTATGTGCCCAAATGAGTGTCCTGGCCTCTATGATTCATGGGGTGAGTAG 1313 Query 75809 TTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAGC- 75867 ||||| || || ||||||| |||| |||| || ||| || ||| Sbjct 1314 TTTGAGAAGCTGTATGAGCAGTATGAGAAGGATAAGAGAGGCAGAAAGACAATAAAAGCT 1373 Query 75868 -CGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGC 75926 | | | ||| || || | | |||| || || || || ||||| |||| Sbjct 1374 AGGTAACTCTGGGGATGG--ATCATTGAGAGTCAGATCGAAACAGGCACCCCATACATGC 1431 Query 75927 TTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCT 75986 | ||||| ||||| |||||| || || ||| | | || || || || || ||| | Sbjct 1432 TCTACAAAGATGCGTGTAACCGCAAAAGCAACTAGCAAAACTTAGGCACTATTAAGTCTT 1491 Query 75987 CAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATT 76046 |||| || ||||| || || | |||||||| | ||||| ||||| ||||| Sbjct 1492 CAAACCTGTGCACTGAGATCATCGAGTACACCTCTGCCGATGAAGTCGCTGTCTGCAACC 1551 Query 76047 TGGCATCAATCGCCCTTCCAAAGTATGTCAA 76077 | || || || |||||||| ||| ||||| Sbjct 1552 TCGCCTCCATTGCCCTTCCCCAGTTCGTCAA 1582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596253283883840