Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq39418 84.2 4e-11 seq39092 84.2 4e-11 >seq39418 Length=937 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| || | || || | ||| | || | ||| || ||| ||||| || Sbjct 520 ATTCCACCTCTCAGTCTCAAGACGAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCG 579 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | || ||||| | ||| || || ||||| | |||||||||||| ||| Sbjct 580 GAGAGGGTTCTGCCGTCTTCCAACTATTTGCCGGCGAAGATGAGTCTCTGTTGATCGGGT 639 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| || || || ||| || || || || | ||||| | || Sbjct 640 GGGATTCCTTCTTTGTCCTGGATCTTAGCCTTCACGTTCTCGATGGTGTCTGATGGCTCG 699 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | || || || || || || | || || | ||| || |||||| Sbjct 700 ACGTCCAAGGTGATAGTCTTTCCTGTGAGAGTCTTCACAAAGATTTGCATT 750 >seq39092 Length=483 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| || | || || | ||| | || | ||| || ||| ||||| || Sbjct 66 ATTCCACCTCTCAGTCTCAAGACGAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCG 125 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | || ||||| | ||| || || ||||| | |||||||||||| ||| Sbjct 126 GAGAGGGTTCTGCCGTCTTCCAACTATTTGCCGGCGAAGATGAGTCTCTGTTGATCGGGT 185 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| || || || ||| || || || || | ||||| | || Sbjct 186 GGGATTCCTTCTTTGTCCTGGATCTTAGCCTTCACGTTCTCGATGGTGTCTGATGGCTCG 245 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | || || || || || || | || || | ||| || |||||| Sbjct 246 ACGTCCAAGGTGATAGTCTTTCCTGTGAGAGTCTTCACAAAGATTTGCATT 296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983944954194300